Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: CAH1259440.1 KCNA1 [Branchiostoma lanceolatum] ... Query length: 484 aa

Query: KCNA1 ...

KCNA1 [Branchiostoma lanceolatum]

484 aa protein

accession:CAH1259440.1

Sequence Identical proteins

shaker-related potassium channel tsha2-like [Danio rerio]

476 aa protein

accession:XP_003201808.1

Alignment Sequence Identical proteins

potassium voltage-gated channel subfamily A member 1 ...

potassium voltage-gated channel subfamily A member 1 [Mus musculus]

495 aa protein

accession:NP_034725.3

Alignment Sequence Identical proteins

potassium voltage-gated channel subfamily A member 2 isoform a ...

potassium voltage-gated channel subfamily A member 2 isoform a [Homo sapiens]

499 aa protein

accession:NP_004965.1

Alignment Sequence Identical proteins

shaker, isoform U ...

shaker, isoform U [Drosophila melanogaster]

587 aa protein

accession:NP_001401061.1

Alignment Sequence Identical proteins

Potassium voltage-gated channel protein shk-1 ...

Potassium voltage-gated channel protein shk-1 [Caenorhabditis elegans]

435 aa protein

accession:NP_001040829.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_003201808.1\|	shaker-related potassium channel tsha2-like [Danio rerio]	348	348	86%	2e-114	42.99%	XP_003201808.1
2 Select seq ref\|NP_034725.3\|	potassium voltage-gated channel subfamily A member 1 [Mus musculus]	345	345	81%	6e-113	43.86%	NP_034725.3
3 Select seq ref\|NP_004965.1\|	potassium voltage-gated channel subfamily A member 2 isoform a [Homo sapiens]	345	345	81%	1e-112	41.99%	NP_004965.1
4 Select seq ref\|NP_001401061.1\|	shaker, isoform U [Drosophila melanogaster]	336	336	78%	4e-108	43.64%	NP_001401061.1
5 Select seq ref\|NP_001040829.1\|	Potassium voltage-gated channel protein shk-1 [Caenorhabditis elegans]	304	304	78%	1e-97	43.19%	NP_001040829.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments