Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: CAL6220987.1 unnamed protein product [Ixodes persulcatus] ... Query length: 233 aa

hypothetical protein DDB_G0285127 ...

hypothetical protein DDB_G0285127 [Dictyostelium discoideum AX4]

366 aa protein

accession:XP_639881.1

Alignment Sequence Identical proteins

Query: unnamed protein product ...

unnamed protein product [Ixodes persulcatus]

233 aa protein

accession:CAL6220987.1

Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG5 ...

nonsense-mediated mRNA decay factor SMG5 [Danio rerio]

1099 aa protein

accession:NP_001020094.1

Alignment Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG5 isoform X4 ...

nonsense-mediated mRNA decay factor SMG5 isoform X4 [Mus musculus]

756 aa protein

accession:XP_006501408.1

Alignment Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG5 isoform 1 ...

nonsense-mediated mRNA decay factor SMG5 isoform 1 [Homo sapiens]

1016 aa protein

accession:NP_056142.2

Alignment Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG5 isoform 2 ...

nonsense-mediated mRNA decay factor SMG5 isoform 2 [Homo sapiens]

963 aa protein

accession:NP_001310543.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001310543.1\|	nonsense-mediated mRNA decay factor SMG5 isoform 2 [Homo sapiens]	128	128	82%	1e-32	37.56%	NP_001310543.1
2 Select seq ref\|XP_006501408.1\|	nonsense-mediated mRNA decay factor SMG5 isoform X4 [Mus musculus]	127	127	67%	3e-32	41.92%	XP_006501408.1
3 Select seq ref\|NP_001020094.1\|	nonsense-mediated mRNA decay factor SMG5 [Danio rerio]	126	126	85%	7e-32	38.14%	NP_001020094.1
4 Select seq ref\|XP_639881.1\|	hypothetical protein DDB_G0285127 [Dictyostelium discoideum AX4]	39.3	39.3	17%	0.023	37.78%	XP_639881.1
5 Select seq ref\|NP_056142.2\|	nonsense-mediated mRNA decay factor SMG5 isoform 1 [Homo sapiens]	127	127	81%	4e-32	37.62%	NP_056142.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments