Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: CCC21083.1 RNA polymerase II [Debaryomyces nepalensis] ... Query length: 224 aa

DNA-directed RNA polymerase II subunit RPB2 isoform 2 ...

DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Homo sapiens]

1099 aa protein

accession:NP_001290197.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]

1174 aa protein

accession:NP_722493.2

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]

1174 aa protein

accession:NP_001019632.2

Alignment Sequence Identical proteins

RNA polymerase II subunit B, isoform B ...

RNA polymerase II subunit B, isoform B [Drosophila melanogaster]

1176 aa protein

accession:NP_001287323.1

Alignment Sequence Identical proteins

Query: RNA polymerase II ...

RNA polymerase II [Debaryomyces nepalensis]

224 aa protein

accession:CCC21083.1

Sequence Identical proteins

DNA-directed RNA polymerase II core subunit RPB2 ...

DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]

1224 aa protein

accession:NP_014794.3

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_014794.3\|	DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]	293	293	100%	1e-90	65.33%	NP_014794.3
2 Select seq ref\|NP_001290197.1\|	DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Homo sapiens]	197	197	100%	1e-56	48.00%	NP_001290197.1
3 Select seq ref\|NP_722493.2\|	DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]	197	197	100%	1e-56	48.00%	NP_722493.2
4 Select seq ref\|NP_001019632.2\|	DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]	194	194	100%	9e-56	46.67%	NP_001019632.2
5 Select seq ref\|NP_001287323.1\|	RNA polymerase II subunit B, isoform B [Drosophila melanogaster]	194	194	100%	2e-55	48.00%	NP_001287323.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments