Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: CCN86182.1 RNA polymerase II complex subunit [Beccariella brevipedicellata] ... Query length: 197 aa

DNA-directed RNA polymerase II subunit RPB2 isoform 2 ...

DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Homo sapiens]

1099 aa protein

accession:NP_001290197.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]

1174 aa protein

accession:NP_722493.2

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]

1174 aa protein

accession:NP_001019632.2

Alignment Sequence Identical proteins

DNA-directed RNA polymerase family protein ...

DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

1188 aa protein

accession:NP_193902.1

Alignment Sequence Identical proteins

Query: RNA polymerase II complex subunit ...

RNA polymerase II complex subunit [Beccariella brevipedicellata]

197 aa protein

accession:CCN86182.1

Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Glycine max]

1192 aa protein

accession:XP_003533774.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_003533774.1\|	DNA-directed RNA polymerase II subunit RPB2 [Glycine max]	401	401	100%	9e-132	94.92%	XP_003533774.1
2 Select seq ref\|NP_193902.1\|	DNA-directed RNA polymerase family protein [Arabidopsis thaliana]	359	359	100%	8e-116	89.85%	NP_193902.1
3 Select seq ref\|NP_001290197.1\|	DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Homo sapiens]	262	262	100%	2e-80	65.15%	NP_001290197.1
4 Select seq ref\|NP_722493.2\|	DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]	262	262	100%	4e-80	65.15%	NP_722493.2
5 Select seq ref\|NP_001019632.2\|	DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]	259	259	100%	3e-79	64.14%	NP_001019632.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments