Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
D3ZN95.1
RecName: Full=Host cell factor 1; Short=HCF; Short=HCF-1; AltName: Full=C1 factor; Contains: RecName: Full=HCF N-terminal chain 1; Contains: RecName: Full=HCF N-terminal chain 2; Contains: RecName: Full=HCF N-terminal chain 3; Contains: RecName: Full=HCF N-terminal chain 4; Contains: RecName: Full=HCF N-terminal chain 5; Contains: RecName: Full=HCF N-terminal chain 6; Contains: RecName: Full=HCF C-terminal chain 1; Contains: RecName: Full=HCF C-terminal chain 2; Contains: RecName: Full=HCF C-terminal chain 3; Contains: RecName: Full=HCF C-terminal chain 4; Contains: RecName: Full=HCF C-terminal chain 5; Contains: RecName: Full=HCF C-terminal chain 6 [Rattus norvegicus]
...
Query length:
2034 aa
DOMAINS: and other(s) domains
...
host cell factor, isoform A
...
host cell factor, isoform A [Drosophila melanogaster]
1500 aa protein
accession:NP_524621.2
host cell factor 1b
...
host cell factor 1b [Danio rerio]
1993 aa protein
accession:NP_001122009.1
host cell factor 1 isoform X7
...
host cell factor 1 isoform X7 [Homo sapiens]
2078 aa protein
accession:XP_047298012.1
host cell factor 1 isoform 2 precursor
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host cell factor 1 isoform 2 precursor [Mus musculus]
2045 aa protein
accession:NP_032250.2
Query: RecName: Full=Host cell factor 1; Short=HCF; Short=HCF-1; AltName: Full=C1 factor; Contains: RecName: Full=HCF N-terminal chain 1; Contains: RecName: Full=HCF N-terminal chain 2; Contains: RecName: Full=HCF N-terminal chain 3; Contains: RecName: Full=HCF N-terminal chain 4; Contains: RecName: Full=HCF N-terminal chain 5; Contains: RecName: Full=HCF N-terminal chain 6; Contains: RecName: Full=HCF C-terminal chain 1; Contains: RecName: Full=HCF C-terminal chain 2; Contains: RecName: Full=HCF C-terminal chain 3; Contains: RecName: Full=HCF C-terminal chain 4; Contains: RecName: Full=HCF C-terminal chain 5; Contains: RecName: Full=HCF C-terminal chain 6
...
RecName: Full=Host cell factor 1; Short=HCF; Short=HCF-1; AltName: Full=C1 factor; Contains: RecName: Full=HCF N-terminal chain 1; Contains: RecName: Full=HCF N-terminal chain 2; Contains: RecName: Full=HCF N-terminal chain 3; Contains: RecName: Full=HCF N-terminal chain 4; Contains: RecName: Full=HCF N-terminal chain 5; Contains: RecName: Full=HCF N-terminal chain 6; Contains: RecName: Full=HCF C-terminal chain 1; Contains: RecName: Full=HCF C-terminal chain 2; Contains: RecName: Full=HCF C-terminal chain 3; Contains: RecName: Full=HCF C-terminal chain 4; Contains: RecName: Full=HCF C-terminal chain 5; Contains: RecName: Full=HCF C-terminal chain 6 [Rattus norvegicus]
2034 aa protein
accession:D3ZN95.1
host cell factor 1
...
host cell factor 1 [Rattus norvegicus]
2046 aa protein
accession:NP_001401663.1
DOMAINS: and other(s) domains
...
host cell factor, isoform A [Drosophila melanogaster]
1500 aa protein
accession:NP_524621.2
host cell factor 1b [Danio rerio]
1993 aa protein
accession:NP_001122009.1
host cell factor 1 isoform X7 [Homo sapiens]
2078 aa protein
accession:XP_047298012.1
host cell factor 1 isoform 2 precursor [Mus musculus]
2045 aa protein
accession:NP_032250.2
RecName: Full=Host cell factor 1; Short=HCF; Short=HCF-1; AltName: Full=C1 factor; Contains: RecName: Full=HCF N-terminal chain 1; Contains: RecName: Full=HCF N-terminal chain 2; Contains: RecName: Full=HCF N-terminal chain 3; Contains: RecName: Full=HCF N-terminal chain 4; Contains: RecName: Full=HCF N-terminal chain 5; Contains: RecName: Full=HCF N-terminal chain 6; Contains: RecName: Full=HCF C-terminal chain 1; Contains: RecName: Full=HCF C-terminal chain 2; Contains: RecName: Full=HCF C-terminal chain 3; Contains: RecName: Full=HCF C-terminal chain 4; Contains: RecName: Full=HCF C-terminal chain 5; Contains: RecName: Full=HCF C-terminal chain 6 [Rattus norvegicus]
2034 aa protein
accession:D3ZN95.1
host cell factor 1 [Rattus norvegicus]
2046 aa protein
accession:NP_001401663.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 4056 | 4056 | 100% | 0.0 | 100.00% | NP_001401663.1 | |
2 | 4005 | 4005 | 100% | 0.0 | 98.82% | NP_032250.2 | |
3 | 3286 | 3286 | 100% | 0.0 | 91.39% | XP_047298012.1 | |
4 | 2170 | 2170 | 99% | 0.0 | 64.95% | NP_001122009.1 | |
5 | 630 | 859 | 29% | 0.0 | 66.33% | NP_524621.2 |