Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
JAA13829.1
major histocompatibility complex, class II, DM alpha [Pan troglodytes]
...
Query length:
261 aa
DOMAINS: and other(s) domains
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RT1 class II, DM beta isoform X1
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RT1 class II, DM beta isoform X1 [Rattus norvegicus]
279 aa protein
accession:XP_063135087.1
uncharacterized protein LOC368748 precursor
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uncharacterized protein LOC368748 precursor [Danio rerio]
235 aa protein
accession:NP_001007049.3
HLA class II histocompatibility antigen, DO alpha chain precursor
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HLA class II histocompatibility antigen, DO alpha chain precursor [Homo sapiens]
250 aa protein
accession:NP_002110.1
class II histocompatibility antigen, M alpha chain precursor
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class II histocompatibility antigen, M alpha chain precursor [Mus musculus]
261 aa protein
accession:NP_001411717.1
Query: major histocompatibility complex, class II, DM alpha
...
major histocompatibility complex, class II, DM alpha [Pan troglodytes]
261 aa protein
accession:JAA13829.1
HLA class II histocompatibility antigen, DM alpha chain precursor
...
HLA class II histocompatibility antigen, DM alpha chain precursor [Homo sapiens]
261 aa protein
accession:NP_006111.2
DOMAINS: and other(s) domains
...
RT1 class II, DM beta isoform X1 [Rattus norvegicus]
279 aa protein
accession:XP_063135087.1
uncharacterized protein LOC368748 precursor [Danio rerio]
235 aa protein
accession:NP_001007049.3
HLA class II histocompatibility antigen, DO alpha chain precursor [Homo sapiens]
250 aa protein
accession:NP_002110.1
class II histocompatibility antigen, M alpha chain precursor [Mus musculus]
261 aa protein
accession:NP_001411717.1
major histocompatibility complex, class II, DM alpha [Pan troglodytes]
261 aa protein
accession:JAA13829.1
HLA class II histocompatibility antigen, DM alpha chain precursor [Homo sapiens]
261 aa protein
accession:NP_006111.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 526 | 526 | 100% | 0.0 | 97.70% | NP_006111.2 | |
| 2 | 400 | 400 | 100% | 8e-142 | 75.86% | NP_001411717.1 | |
| 3 | 66.2 | 66.2 | 62% | 5e-12 | 30.34% | NP_001007049.3 | |
| 4 | 44.3 | 44.3 | 46% | 3e-04 | 26.02% | XP_063135087.1 | |
| 5 | 100 | 100 | 73% | 2e-24 | 32.32% | NP_002110.1 |