Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
KPX48106.1
23S rRNA m [Pseudomonas ficuserectae]
...
Query length:
193 aa
DOMAINS: and other(s) domains
...
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
...
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Bacillaceae]
466 aa protein
accession:WP_003233644.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
...
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Microcystis]
455 aa protein
accession:WP_012266419.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
...
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Shewanella oneidensis]
449 aa protein
accession:WP_011073303.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
...
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Escherichia coli]
433 aa protein
accession:WP_000046824.1
Query: 23S rRNA m
...
23S rRNA m [Pseudomonas ficuserectae]
193 aa protein
accession:KPX48106.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
...
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Pseudomonas]
450 aa protein
accession:WP_003102417.1
DOMAINS: and other(s) domains
...
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Bacillaceae]
466 aa protein
accession:WP_003233644.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Microcystis]
455 aa protein
accession:WP_012266419.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Shewanella oneidensis]
449 aa protein
accession:WP_011073303.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Escherichia coli]
433 aa protein
accession:WP_000046824.1
23S rRNA m [Pseudomonas ficuserectae]
193 aa protein
accession:KPX48106.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Pseudomonas]
450 aa protein
accession:WP_003102417.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 195 | 195 | 79% | 2e-59 | 63.40% | WP_003102417.1 | |
| 2 | 77.8 | 77.8 | 54% | 1e-15 | 36.79% | WP_003233644.1 | |
| 3 | 69.3 | 69.3 | 65% | 1e-12 | 34.13% | WP_011073303.1 | |
| 4 | 63.2 | 63.2 | 63% | 2e-10 | 32.52% | WP_000046824.1 | |
| 5 | 61.2 | 61.2 | 64% | 8e-10 | 27.78% | WP_012266419.1 |