Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001002173.1 nuclear receptor subfamily 4immunitygroup A member 1 [Danio rerio] ... Query length: 574 aa

Nuclear hormone receptor family member nhr-6 ...

Nuclear hormone receptor family member nhr-6 [Caenorhabditis elegans]

483 aa protein

accession:NP_001379487.1

Alignment Sequence Identical proteins

retinoic acid receptor gamma-B ...

retinoic acid receptor gamma-B [Danio rerio]

482 aa protein

accession:NP_001076779.2

Alignment Sequence Identical proteins

retinoic acid receptor RXR-beta isoform 2 ...

retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]

533 aa protein

accession:NP_068811.1

Alignment Sequence Identical proteins

Query: nuclear receptor subfamily 4immunitygroup A member 1 ...

nuclear receptor subfamily 4immunitygroup A member 1 [Danio rerio]

574 aa protein

accession:NP_001002173.1

Sequence Identical proteins

nuclear receptor subfamily 4 group A member 1 ...

nuclear receptor subfamily 4 group A member 1 [Mus musculus]

601 aa protein

accession:NP_001398182.1

Alignment Sequence Identical proteins

nuclear receptor subfamily 4 group A member 1 isoform X1 ...

nuclear receptor subfamily 4 group A member 1 isoform X1 [Rattus norvegicus]

597 aa protein

accession:XP_063120357.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001398182.1\|	nuclear receptor subfamily 4 group A member 1 [Mus musculus]	601	601	100%	0.0	55.92%	NP_001398182.1
2 Select seq ref\|XP_063120357.1\|	nuclear receptor subfamily 4 group A member 1 isoform X1 [Rattus norvegicus]	583	583	100%	0.0	54.88%	XP_063120357.1
3 Select seq ref\|NP_001076779.2\|	retinoic acid receptor gamma-B [Danio rerio]	193	193	57%	4e-54	34.13%	NP_001076779.2
4 Select seq ref\|NP_001379487.1\|	Nuclear hormone receptor family member nhr-6 [Caenorhabditis elegans]	183	183	61%	2e-50	33.15%	NP_001379487.1
5 Select seq ref\|NP_068811.1\|	retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]	173	173	58%	2e-46	31.07%	NP_068811.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments