Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001008852.1
RT1 class I, locus M6, gene 1 precursor [Rattus norvegicus]
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Query length:
330 aa
DOMAINS: and other(s) domains
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HLA class I histocompatibility antigen, A alpha chain isoform A*03:01:01:01 precursor
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HLA class I histocompatibility antigen, A alpha chain isoform A*03:01:01:01 precursor [Homo sapiens]
365 aa protein
accession:NP_002107.3
histocompatibility 2, M region locus 5 precursor
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histocompatibility 2, M region locus 5 precursor [Mus musculus]
348 aa protein
accession:NP_001108547.1
Query: RT1 class I, locus M6, gene 1 precursor
...
RT1 class I, locus M6, gene 1 precursor [Rattus norvegicus]
330 aa protein
accession:NP_001008852.1
RT1 class I, locus M6, gene 2 precursor
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RT1 class I, locus M6, gene 2 precursor [Rattus norvegicus]
332 aa protein
accession:NP_001008853.1
RT1 class I, locus M6, gene 2 isoform X2
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RT1 class I, locus M6, gene 2 isoform X2 [Rattus norvegicus]
355 aa protein
accession:XP_017457185.2
RT1 class I, locus M6, gene 2 isoform X1
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RT1 class I, locus M6, gene 2 isoform X1 [Rattus norvegicus]
432 aa protein
accession:XP_063135395.1
DOMAINS: and other(s) domains
...
HLA class I histocompatibility antigen, A alpha chain isoform A*03:01:01:01 precursor [Homo sapiens]
365 aa protein
accession:NP_002107.3
histocompatibility 2, M region locus 5 precursor [Mus musculus]
348 aa protein
accession:NP_001108547.1
RT1 class I, locus M6, gene 1 precursor [Rattus norvegicus]
330 aa protein
accession:NP_001008852.1
RT1 class I, locus M6, gene 2 precursor [Rattus norvegicus]
332 aa protein
accession:NP_001008853.1
RT1 class I, locus M6, gene 2 isoform X2 [Rattus norvegicus]
355 aa protein
accession:XP_017457185.2
RT1 class I, locus M6, gene 2 isoform X1 [Rattus norvegicus]
432 aa protein
accession:XP_063135395.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 581 | 581 | 100% | 0.0 | 89.76% | NP_001008853.1 | |
| 2 | 338 | 338 | 89% | 5e-114 | 52.81% | NP_002107.3 | |
| 3 | 332 | 332 | 88% | 7e-112 | 52.87% | NP_001108547.1 | |
| 4 | 543 | 543 | 96% | 0.0 | 83.87% | XP_017457185.2 | |
| 5 | 521 | 521 | 88% | 0.0 | 82.48% | XP_063135395.1 |