Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001008886.2
RT1 class Ib, locus S3 precursor [Rattus norvegicus]
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Query length:
365 aa
DOMAINS: and other(s) domains
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HLA class I histocompatibility antigen, A alpha chain isoform A*03:01:01:01 precursor
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HLA class I histocompatibility antigen, A alpha chain isoform A*03:01:01:01 precursor [Homo sapiens]
365 aa protein
accession:NP_002107.3
Query: RT1 class Ib, locus S3 precursor
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RT1 class Ib, locus S3 precursor [Rattus norvegicus]
365 aa protein
accession:NP_001008886.2
RT1 class I, locus CE1 isoform X3
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RT1 class I, locus CE1 isoform X3 [Rattus norvegicus]
354 aa protein
accession:XP_063135171.1
RT1 class I, locus CE5 isoform X10
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RT1 class I, locus CE5 isoform X10 [Rattus norvegicus]
366 aa protein
accession:XP_063135184.1
RT1 class I, locus CE5 isoform X8
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RT1 class I, locus CE5 isoform X8 [Rattus norvegicus]
370 aa protein
accession:XP_063135183.1
H-2 class I histocompatibility antigen, K-W28 alpha chain isoform 4 precursor
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H-2 class I histocompatibility antigen, K-W28 alpha chain isoform 4 precursor [Mus musculus]
374 aa protein
accession:NP_001390292.1
DOMAINS: and other(s) domains
...
HLA class I histocompatibility antigen, A alpha chain isoform A*03:01:01:01 precursor [Homo sapiens]
365 aa protein
accession:NP_002107.3
RT1 class Ib, locus S3 precursor [Rattus norvegicus]
365 aa protein
accession:NP_001008886.2
RT1 class I, locus CE1 isoform X3 [Rattus norvegicus]
354 aa protein
accession:XP_063135171.1
RT1 class I, locus CE5 isoform X10 [Rattus norvegicus]
366 aa protein
accession:XP_063135184.1
RT1 class I, locus CE5 isoform X8 [Rattus norvegicus]
370 aa protein
accession:XP_063135183.1
H-2 class I histocompatibility antigen, K-W28 alpha chain isoform 4 precursor [Mus musculus]
374 aa protein
accession:NP_001390292.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 489 | 489 | 90% | 1e-173 | 72.42% | XP_063135171.1 | |
| 2 | 453 | 453 | 93% | 3e-159 | 65.03% | NP_001390292.1 | |
| 3 | 438 | 438 | 98% | 3e-153 | 61.88% | NP_002107.3 | |
| 4 | 484 | 484 | 93% | 2e-171 | 69.12% | XP_063135184.1 | |
| 5 | 484 | 484 | 93% | 2e-171 | 69.71% | XP_063135183.1 |