Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001100063.1 mitochondrial assembly of ribosomal large subunit protein 1 [Rattus norvegicus] ... Query length: 229 aa

ribosome silencing factor ...

ribosome silencing factor [Shewanella]

109 aa protein

accession:WP_011071401.1

Alignment Sequence Identical proteins

ribosome silencing factor ...

ribosome silencing factor [Enterobacteriaceae]

105 aa protein

accession:WP_001161664.1

Alignment Sequence Identical proteins

ribosome silencing factor ...

ribosome silencing factor [Pseudomonas]

118 aa protein

accession:WP_003100305.1

Alignment Sequence Identical proteins

mitochondrial assembly of ribosomal large subunit protein 1 ...

mitochondrial assembly of ribosomal large subunit protein 1 [Danio rerio]

220 aa protein

accession:NP_001313544.1

Alignment Sequence Identical proteins

Query: mitochondrial assembly of ribosomal large subunit protein 1 ...

mitochondrial assembly of ribosomal large subunit protein 1 [Rattus norvegicus]

229 aa protein

accession:NP_001100063.1

Sequence Identical proteins

mitochondrial assembly of ribosomal large subunit protein 1 isoform X3 ...

mitochondrial assembly of ribosomal large subunit protein 1 isoform X3 [Mus musculus]

226 aa protein

accession:XP_036008279.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_036008279.1\|	mitochondrial assembly of ribosomal large subunit protein 1 isoform X3 [Mus musculus]	423	423	99%	8e-152	90.31%	XP_036008279.1
2 Select seq ref\|NP_001313544.1\|	mitochondrial assembly of ribosomal large subunit protein 1 [Danio rerio]	165	165	54%	4e-50	59.20%	NP_001313544.1
3 Select seq ref\|WP_011071401.1\|	ribosome silencing factor [Shewanella]	80.9	80.9	39%	9e-19	42.22%	WP_011071401.1
4 Select seq ref\|WP_001161664.1\|	ribosome silencing factor [Enterobacteriaceae]	68.9	68.9	44%	3e-14	30.69%	WP_001161664.1
5 Select seq ref\|WP_003100305.1\|	ribosome silencing factor [Pseudomonas]	67.0	67.0	44%	2e-13	30.69%	WP_003100305.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments