Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001123116.1 Ligand-Gated ion Channel [Caenorhabditis elegans] ... Query length: 564 aa

glycine receptor subunit alpha-3 isoform X3 ...

glycine receptor subunit alpha-3 isoform X3 [Homo sapiens]

409 aa protein

accession:XP_047272153.1

Alignment Sequence Identical proteins

glycine receptor subunit alpha-3 precursor ...

glycine receptor subunit alpha-3 precursor [Rattus norvegicus]

464 aa protein

accession:NP_446176.4

Alignment Sequence Identical proteins

glycine receptor subunit alpha-2 isoform X3 ...

glycine receptor subunit alpha-2 isoform X3 [Mus musculus]

396 aa protein

accession:XP_030107196.1

Alignment Sequence Identical proteins

glycine receptor subunit alpha-2 isoform X1 ...

glycine receptor subunit alpha-2 isoform X1 [Danio rerio]

448 aa protein

accession:XP_021334452.1

Alignment Sequence Identical proteins

Query: Ligand-Gated ion Channel ...

Ligand-Gated ion Channel [Caenorhabditis elegans]

564 aa protein

accession:NP_001123116.1

Sequence Identical proteins

Ligand-Gated ion Channel ...

Ligand-Gated ion Channel [Caenorhabditis elegans]

567 aa protein

accession:NP_001360683.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001360683.1\|	Ligand-Gated ion Channel [Caenorhabditis elegans]	1170	1170	100%	0.0	99.47%	NP_001360683.1
2 Select seq ref\|XP_021334452.1\|	glycine receptor subunit alpha-2 isoform X1 [Danio rerio]	233	275	70%	6e-69	38.18%	XP_021334452.1
3 Select seq ref\|XP_030107196.1\|	glycine receptor subunit alpha-2 isoform X3 [Mus musculus]	224	224	51%	2e-66	38.01%	XP_030107196.1
4 Select seq ref\|XP_047272153.1\|	glycine receptor subunit alpha-3 isoform X3 [Homo sapiens]	224	224	51%	3e-66	38.10%	XP_047272153.1
5 Select seq ref\|NP_446176.4\|	glycine receptor subunit alpha-3 precursor [Rattus norvegicus]	224	224	51%	1e-65	38.10%	NP_446176.4

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments