Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001165639.1 E3 ubiquitin ligase TRIM40 isoform 2 [Mus musculus] ... Query length: 212 aa

E3 ubiquitin-protein ligase TRIM15 isoform X1 ...

E3 ubiquitin-protein ligase TRIM15 isoform X1 [Mus musculus]

312 aa protein

accession:XP_036016670.1

Alignment Sequence Identical proteins

tripartite motif containing 35-31 ...

tripartite motif containing 35-31 [Danio rerio]

455 aa protein

accession:NP_001103855.2

Alignment Sequence Identical proteins

E3 ubiquitin ligase TRIM40 isoform X1 ...

E3 ubiquitin ligase TRIM40 isoform X1 [Homo sapiens]

258 aa protein

accession:XP_054186748.1

Alignment Sequence Identical proteins

Query: E3 ubiquitin ligase TRIM40 isoform 2 ...

E3 ubiquitin ligase TRIM40 isoform 2 [Mus musculus]

212 aa protein

accession:NP_001165639.1

Sequence Identical proteins

E3 ubiquitin ligase TRIM40 isoform X2 ...

E3 ubiquitin ligase TRIM40 isoform X2 [Rattus norvegicus]

247 aa protein

accession:XP_063135397.1

Alignment Sequence Identical proteins

E3 ubiquitin ligase TRIM40 isoform X1 ...

E3 ubiquitin ligase TRIM40 isoform X1 [Rattus norvegicus]

250 aa protein

accession:XP_063135396.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_063135397.1\|	E3 ubiquitin ligase TRIM40 isoform X2 [Rattus norvegicus]	339	339	100%	1e-118	73.28%	XP_063135397.1
2 Select seq ref\|XP_054186748.1\|	E3 ubiquitin ligase TRIM40 isoform X1 [Homo sapiens]	243	243	96%	2e-80	56.38%	XP_054186748.1
3 Select seq ref\|XP_036016670.1\|	E3 ubiquitin-protein ligase TRIM15 isoform X1 [Mus musculus]	86.7	86.7	74%	2e-19	32.02%	XP_036016670.1
4 Select seq ref\|NP_001103855.2\|	tripartite motif containing 35-31 [Danio rerio]	68.6	68.6	80%	1e-12	27.50%	NP_001103855.2
5 Select seq ref\|XP_063135396.1\|	E3 ubiquitin ligase TRIM40 isoform X1 [Rattus norvegicus]	317	317	99%	4e-110	77.36%	XP_063135396.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments