Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001256980.1 LIM/homeobox protein lim-6 [Caenorhabditis elegans] ... Query length: 316 aa

LIM homeobox transcription factor 1 alpha, isoform C ...

LIM homeobox transcription factor 1 alpha, isoform C [Drosophila melanogaster]

639 aa protein

accession:NP_001261754.1

Alignment Sequence Identical proteins

LIM homeobox transcription factor 1, beta a isoform 1 ...

LIM homeobox transcription factor 1, beta a isoform 1 [Danio rerio]

375 aa protein

accession:NP_001349521.1

Alignment Sequence Identical proteins

LIM homeobox transcription factor 1-alpha ...

LIM homeobox transcription factor 1-alpha [Mus musculus]

382 aa protein

accession:NP_001404412.1

Alignment Sequence Identical proteins

Query: LIM/homeobox protein lim-6 ...

LIM/homeobox protein lim-6 [Caenorhabditis elegans]

316 aa protein

accession:NP_001256980.1

Sequence Identical proteins

LIM/homeobox protein Lhx4 isoform X1 ...

LIM/homeobox protein Lhx4 isoform X1 [Rattus norvegicus]

376 aa protein

accession:XP_063128548.1

Alignment Sequence Identical proteins

LIM/homeobox protein Lhx1 ...

LIM/homeobox protein Lhx1 [Homo sapiens]

406 aa protein

accession:NP_005559.2

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001349521.1\|	LIM homeobox transcription factor 1, beta a isoform 1 [Danio rerio]	191	191	64%	4e-57	44.80%	NP_001349521.1
2 Select seq ref\|NP_001404412.1\|	LIM homeobox transcription factor 1-alpha [Mus musculus]	181	181	66%	3e-53	40.79%	NP_001404412.1
3 Select seq ref\|NP_001261754.1\|	LIM homeobox transcription factor 1 alpha, isoform C [Drosophila melanogaster]	184	184	65%	3e-52	42.27%	NP_001261754.1
4 Select seq ref\|XP_063128548.1\|	LIM/homeobox protein Lhx4 isoform X1 [Rattus norvegicus]	171	171	75%	3e-49	38.11%	XP_063128548.1
5 Select seq ref\|NP_005559.2\|	LIM/homeobox protein Lhx1 [Homo sapiens]	143	143	64%	1e-38	33.05%	NP_005559.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments