Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001277620.1 collagen alpha-1(IX) chain isoform 2 precursor [Mus musculus] ... Query length: 680 aa

collagen alpha-1(XXVII) chain isoform X3 ...

collagen alpha-1(XXVII) chain isoform X3 [Mus musculus]

1828 aa protein

accession:XP_036020100.1

Alignment Sequence Identical proteins

collagen alpha-6(IV) chain precursor ...

collagen alpha-6(IV) chain precursor [Rattus norvegicus]

1690 aa protein

accession:NP_001414189.1

Alignment Sequence Identical proteins

collagen alpha-6(IV) chain isoform X4 ...

collagen alpha-6(IV) chain isoform X4 [Homo sapiens]

1667 aa protein

accession:XP_047297769.1

Alignment Sequence Identical proteins

collagen alpha-2(IX) chain precursor ...

collagen alpha-2(IX) chain precursor [Danio rerio]

691 aa protein

accession:NP_997744.2

Alignment Sequence Identical proteins

Query: collagen alpha-1(IX) chain isoform 2 precursor ...

collagen alpha-1(IX) chain isoform 2 precursor [Mus musculus]

680 aa protein

accession:NP_001277620.1

Sequence Identical proteins

collagen, type IX, alpha 1b precursor ...

collagen, type IX, alpha 1b precursor [Danio rerio]

681 aa protein

accession:NP_998429.2

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_998429.2\|	collagen, type IX, alpha 1b precursor [Danio rerio]	479	479	96%	2e-160	65.44%	NP_998429.2
2 Select seq ref\|NP_001414189.1\|	collagen alpha-6(IV) chain precursor [Rattus norvegicus]	223	1766	97%	2e-60	41.08%	NP_001414189.1
3 Select seq ref\|XP_047297769.1\|	collagen alpha-6(IV) chain isoform X4 [Homo sapiens]	205	1687	96%	2e-54	38.58%	XP_047297769.1
4 Select seq ref\|XP_036020100.1\|	collagen alpha-1(XXVII) chain isoform X3 [Mus musculus]	167	540	93%	6e-42	41.64%	XP_036020100.1
5 Select seq ref\|NP_997744.2\|	collagen alpha-2(IX) chain precursor [Danio rerio]	251	318	97%	9e-73	52.42%	NP_997744.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments