Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001340580.1 regulator of nonsense transcripts 3A isoform e [Homo sapiens] ... Query length: 251 aa

Upf3, isoform D ...

Upf3, isoform D [Drosophila melanogaster]

492 aa protein

accession:NP_611844.3

Alignment Sequence Identical proteins

regulator of nonsense transcripts 3A isoform X2 ...

regulator of nonsense transcripts 3A isoform X2 [Danio rerio]

452 aa protein

accession:XP_068079539.1

Alignment Sequence Identical proteins

regulator of nonsense transcripts 3A ...

regulator of nonsense transcripts 3A [Rattus norvegicus]

405 aa protein

accession:NP_001012159.1

Alignment Sequence Identical proteins

regulator of nonsense transcripts 3A isoform X1 ...

regulator of nonsense transcripts 3A isoform X1 [Mus musculus]

360 aa protein

accession:XP_006508923.1

Alignment Sequence Identical proteins

Query: regulator of nonsense transcripts 3A isoform e ...

regulator of nonsense transcripts 3A isoform e [Homo sapiens]

251 aa protein

accession:NP_001340580.1

Sequence Identical proteins

regulator of nonsense transcripts 3A isoform X5 ...

regulator of nonsense transcripts 3A isoform X5 [Homo sapiens]

284 aa protein

accession:XP_047286503.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047286503.1\|	regulator of nonsense transcripts 3A isoform X5 [Homo sapiens]	497	497	100%	3e-179	88.38%	XP_047286503.1
2 Select seq ref\|NP_001012159.1\|	regulator of nonsense transcripts 3A [Rattus norvegicus]	255	255	70%	3e-82	64.93%	NP_001012159.1
3 Select seq ref\|XP_006508923.1\|	regulator of nonsense transcripts 3A isoform X1 [Mus musculus]	233	233	70%	4e-74	65.40%	XP_006508923.1
4 Select seq ref\|XP_068079539.1\|	regulator of nonsense transcripts 3A isoform X2 [Danio rerio]	185	185	70%	1e-54	49.76%	XP_068079539.1
5 Select seq ref\|NP_611844.3\|	Upf3, isoform D [Drosophila melanogaster]	80.5	80.5	36%	6e-16	40.43%	NP_611844.3

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments