Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001365964.1
pre-mRNA-processing factor 40 homolog B isoform 9 [Homo sapiens]
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Query length:
829 aa
DOMAINS: and other(s) domains
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U1 snRNP-associated protein Prp40
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U1 snRNP-associated protein Prp40 [Schizosaccharomyces pombe]
695 aa protein
accession:NP_594966.1
pre-mRNA-processing protein 40A isoform X2
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pre-mRNA-processing protein 40A isoform X2 [Glycine max]
1008 aa protein
accession:XP_040869224.1
Pre-mRNA-processing factor 40 homolog B
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Pre-mRNA-processing factor 40 homolog B [Caenorhabditis elegans]
695 aa protein
accession:NP_001407496.1
pre-mRNA-processing factor 40 homolog B isoform X8
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pre-mRNA-processing factor 40 homolog B isoform X8 [Mus musculus]
886 aa protein
accession:XP_036015416.1
Query: pre-mRNA-processing factor 40 homolog B isoform 9
...
pre-mRNA-processing factor 40 homolog B isoform 9 [Homo sapiens]
829 aa protein
accession:NP_001365964.1
pre-mRNA-processing factor 40 homolog B isoform X11
...
pre-mRNA-processing factor 40 homolog B isoform X11 [Rattus norvegicus]
877 aa protein
accession:XP_063120029.1
DOMAINS: and other(s) domains
...
U1 snRNP-associated protein Prp40 [Schizosaccharomyces pombe]
695 aa protein
accession:NP_594966.1
pre-mRNA-processing protein 40A isoform X2 [Glycine max]
1008 aa protein
accession:XP_040869224.1
Pre-mRNA-processing factor 40 homolog B [Caenorhabditis elegans]
695 aa protein
accession:NP_001407496.1
pre-mRNA-processing factor 40 homolog B isoform X8 [Mus musculus]
886 aa protein
accession:XP_036015416.1
pre-mRNA-processing factor 40 homolog B isoform 9 [Homo sapiens]
829 aa protein
accession:NP_001365964.1
pre-mRNA-processing factor 40 homolog B isoform X11 [Rattus norvegicus]
877 aa protein
accession:XP_063120029.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 1439 | 1439 | 92% | 0.0 | 90.43% | XP_063120029.1 | |
| 2 | 1294 | 1294 | 81% | 0.0 | 90.50% | XP_036015416.1 | |
| 3 | 357 | 357 | 76% | 5e-111 | 34.98% | NP_001407496.1 | |
| 4 | 188 | 271 | 69% | 2e-48 | 31.81% | XP_040869224.1 | |
| 5 | 164 | 164 | 68% | 3e-41 | 23.72% | NP_594966.1 |