Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001368736.1 Ligand-Gated ion Channel [Caenorhabditis elegans] ... Query length: 540 aa

glycine receptor subunit alpha-1 isoform X1 ...

glycine receptor subunit alpha-1 isoform X1 [Homo sapiens]

465 aa protein

accession:XP_047273061.1

Alignment Sequence Identical proteins

glycine receptor subunit alpha-1 isoform 2 precursor ...

glycine receptor subunit alpha-1 isoform 2 precursor [Mus musculus]

449 aa protein

accession:NP_065238.2

Alignment Sequence Identical proteins

glycine receptor subunit alpha-1 isoform X1 ...

glycine receptor subunit alpha-1 isoform X1 [Rattus norvegicus]

457 aa protein

accession:XP_006246440.1

Alignment Sequence Identical proteins

Glutamate-gated chloride channel subunit alpha, isoform I ...

Glutamate-gated chloride channel subunit alpha, isoform I [Drosophila melanogaster]

456 aa protein

accession:NP_732447.2

Alignment Sequence Identical proteins

Query: Ligand-Gated ion Channel ...

Ligand-Gated ion Channel [Caenorhabditis elegans]

540 aa protein

accession:NP_001368736.1

Sequence Identical proteins

Ligand-Gated ion Channel ...

Ligand-Gated ion Channel [Caenorhabditis elegans]

553 aa protein

accession:NP_001368738.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001368738.1\|	Ligand-Gated ion Channel [Caenorhabditis elegans]	1125	1125	100%	0.0	97.65%	NP_001368738.1
2 Select seq ref\|XP_047273061.1\|	glycine receptor subunit alpha-1 isoform X1 [Homo sapiens]	256	300	66%	8e-78	36.87%	XP_047273061.1
3 Select seq ref\|NP_732447.2\|	Glutamate-gated chloride channel subunit alpha, isoform I [Drosophila melanogaster]	252	294	61%	2e-76	38.87%	NP_732447.2
4 Select seq ref\|NP_065238.2\|	glycine receptor subunit alpha-1 isoform 2 precursor [Mus musculus]	249	293	63%	1e-75	37.23%	NP_065238.2
5 Select seq ref\|XP_006246440.1\|	glycine receptor subunit alpha-1 isoform X1 [Rattus norvegicus]	248	291	63%	5e-75	36.92%	XP_006246440.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments