Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001382402.1
pre-mRNA-processing factor 40 homolog A isoform 1 [Homo sapiens]
...
Query length:
930 aa
DOMAINS: and other(s) domains
...
U1 snRNP-associated protein Prp40
...
U1 snRNP-associated protein Prp40 [Schizosaccharomyces pombe]
695 aa protein
accession:NP_594966.1
pre-mRNA-processing protein 40A isoform X2
...
pre-mRNA-processing protein 40A isoform X2 [Glycine max]
1008 aa protein
accession:XP_040869224.1
Pre-mRNA-processing factor 40 homolog B
...
Pre-mRNA-processing factor 40 homolog B [Caenorhabditis elegans]
695 aa protein
accession:NP_001407496.1
Query: pre-mRNA-processing factor 40 homolog A isoform 1
...
pre-mRNA-processing factor 40 homolog A isoform 1 [Homo sapiens]
930 aa protein
accession:NP_001382402.1
pre-mRNA-processing factor 40 homolog B isoform X9
...
pre-mRNA-processing factor 40 homolog B isoform X9 [Rattus norvegicus]
889 aa protein
accession:XP_063120028.1
pre-mRNA-processing factor 40 homolog B isoform X10
...
pre-mRNA-processing factor 40 homolog B isoform X10 [Mus musculus]
880 aa protein
accession:XP_036015417.1
DOMAINS: and other(s) domains
...
U1 snRNP-associated protein Prp40 [Schizosaccharomyces pombe]
695 aa protein
accession:NP_594966.1
pre-mRNA-processing protein 40A isoform X2 [Glycine max]
1008 aa protein
accession:XP_040869224.1
Pre-mRNA-processing factor 40 homolog B [Caenorhabditis elegans]
695 aa protein
accession:NP_001407496.1
pre-mRNA-processing factor 40 homolog A isoform 1 [Homo sapiens]
930 aa protein
accession:NP_001382402.1
pre-mRNA-processing factor 40 homolog B isoform X9 [Rattus norvegicus]
889 aa protein
accession:XP_063120028.1
pre-mRNA-processing factor 40 homolog B isoform X10 [Mus musculus]
880 aa protein
accession:XP_036015417.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 640 | 782 | 76% | 0.0 | 64.61% | XP_063120028.1 | |
| 2 | 614 | 756 | 63% | 0.0 | 72.47% | XP_036015417.1 | |
| 3 | 338 | 437 | 61% | 4e-103 | 43.39% | NP_001407496.1 | |
| 4 | 284 | 284 | 83% | 2e-80 | 31.10% | XP_040869224.1 | |
| 5 | 171 | 250 | 60% | 3e-43 | 26.75% | NP_594966.1 |