Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001389099.1
transcription initiation factor TFIID subunit 4 [Rattus norvegicus]
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Query length:
1040 aa
DOMAINS: and other(s) domains
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TBP-associated factor 4, isoform C
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TBP-associated factor 4, isoform C [Drosophila melanogaster]
851 aa protein
accession:NP_788511.1
transcription initiation factor TFIID subunit 4B isoform X2
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transcription initiation factor TFIID subunit 4B isoform X2 [Rattus norvegicus]
684 aa protein
accession:XP_006254502.1
transcription initiation factor TFIID subunit 4 isoform X2
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transcription initiation factor TFIID subunit 4 isoform X2 [Danio rerio]
820 aa protein
accession:XP_001920944.4
transcription initiation factor TFIID subunit 4
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transcription initiation factor TFIID subunit 4 [Homo sapiens]
1085 aa protein
accession:NP_003176.2
Query: transcription initiation factor TFIID subunit 4
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transcription initiation factor TFIID subunit 4 [Rattus norvegicus]
1040 aa protein
accession:NP_001389099.1
transcription initiation factor TFIID subunit 4
...
transcription initiation factor TFIID subunit 4 [Mus musculus]
1042 aa protein
accession:NP_001074561.1
DOMAINS: and other(s) domains
...
TBP-associated factor 4, isoform C [Drosophila melanogaster]
851 aa protein
accession:NP_788511.1
transcription initiation factor TFIID subunit 4B isoform X2 [Rattus norvegicus]
684 aa protein
accession:XP_006254502.1
transcription initiation factor TFIID subunit 4 isoform X2 [Danio rerio]
820 aa protein
accession:XP_001920944.4
transcription initiation factor TFIID subunit 4 [Homo sapiens]
1085 aa protein
accession:NP_003176.2
transcription initiation factor TFIID subunit 4 [Rattus norvegicus]
1040 aa protein
accession:NP_001389099.1
transcription initiation factor TFIID subunit 4 [Mus musculus]
1042 aa protein
accession:NP_001074561.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 1969 | 1969 | 100% | 0.0 | 98.75% | NP_001074561.1 | |
| 2 | 1193 | 1193 | 71% | 0.0 | 89.57% | NP_003176.2 | |
| 3 | 755 | 755 | 63% | 0.0 | 63.81% | XP_001920944.4 | |
| 4 | 342 | 469 | 40% | 4e-103 | 57.00% | XP_006254502.1 | |
| 5 | 251 | 328 | 34% | 7e-69 | 49.47% | NP_788511.1 |