Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001392091.2
pogo transposable element with KRAB domain isoform 3 [Mus musculus]
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Query length:
574 aa
DOMAINS: and other(s) domains
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HTH CENPB-type domain-containing protein
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HTH CENPB-type domain-containing protein [Caenorhabditis elegans]
259 aa protein
accession:NP_501504.1
pogo transposable element with KRAB domain isoform 1
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pogo transposable element with KRAB domain isoform 1 [Homo sapiens]
609 aa protein
accession:NP_060012.3
pogo transposable element with KRAB domain isoform X2
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pogo transposable element with KRAB domain isoform X2 [Homo sapiens]
591 aa protein
accession:XP_011508117.1
pogo transposable element with KRAB domain isoform 5
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pogo transposable element with KRAB domain isoform 5 [Mus musculus]
489 aa protein
accession:NP_001392093.1
Query: pogo transposable element with KRAB domain isoform 3
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pogo transposable element with KRAB domain isoform 3 [Mus musculus]
574 aa protein
accession:NP_001392091.2
pogo transposable element with KRAB domain isoform 2
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pogo transposable element with KRAB domain isoform 2 [Mus musculus]
607 aa protein
accession:NP_001136420.2
DOMAINS: and other(s) domains
...
HTH CENPB-type domain-containing protein [Caenorhabditis elegans]
259 aa protein
accession:NP_501504.1
pogo transposable element with KRAB domain isoform 1 [Homo sapiens]
609 aa protein
accession:NP_060012.3
pogo transposable element with KRAB domain isoform X2 [Homo sapiens]
591 aa protein
accession:XP_011508117.1
pogo transposable element with KRAB domain isoform 5 [Mus musculus]
489 aa protein
accession:NP_001392093.1
pogo transposable element with KRAB domain isoform 3 [Mus musculus]
574 aa protein
accession:NP_001392091.2
pogo transposable element with KRAB domain isoform 2 [Mus musculus]
607 aa protein
accession:NP_001136420.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 1176 | 1176 | 100% | 0.0 | 94.56% | NP_001136420.2 | |
| 2 | 1076 | 1076 | 100% | 0.0 | 86.86% | NP_060012.3 | |
| 3 | 58.2 | 58.2 | 28% | 6e-08 | 29.31% | NP_501504.1 | |
| 4 | 1031 | 1031 | 100% | 0.0 | 84.24% | XP_011508117.1 | |
| 5 | 1023 | 1023 | 85% | 0.0 | 99.80% | NP_001392093.1 |