Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001397683.1 COUP transcription factor 1 isoform 2 [Homo sapiens] ... Query length: 273 aa

retinoic acid receptor RXR-beta isoform X3 ...

retinoic acid receptor RXR-beta isoform X3 [Homo sapiens]

268 aa protein

accession:XP_047275195.1

Alignment Sequence Identical proteins

photoreceptor-specific nuclear receptor ...

photoreceptor-specific nuclear receptor [Danio rerio]

426 aa protein

accession:NP_001007369.2

Alignment Sequence Identical proteins

nuclear receptor subfamily 2 group E member 1 ...

nuclear receptor subfamily 2 group E member 1 [Rattus norvegicus]

385 aa protein

accession:NP_001106668.2

Alignment Sequence Identical proteins

nuclear receptor subfamily 2 group F member 6 isoform 2 ...

nuclear receptor subfamily 2 group F member 6 isoform 2 [Mus musculus]

269 aa protein

accession:NP_001404352.1

Alignment Sequence Identical proteins

Query: COUP transcription factor 1 isoform 2 ...

COUP transcription factor 1 isoform 2 [Homo sapiens]

273 aa protein

accession:NP_001397683.1

Sequence Identical proteins

seven up, isoform F ...

seven up, isoform F [Drosophila melanogaster]

826 aa protein

accession:NP_001369011.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001369011.1\|	seven up, isoform F [Drosophila melanogaster]	484	484	96%	8e-167	86.08%	NP_001369011.1
2 Select seq ref\|NP_001404352.1\|	nuclear receptor subfamily 2 group F member 6 isoform 2 [Mus musculus]	309	309	97%	2e-105	66.42%	NP_001404352.1
3 Select seq ref\|XP_047275195.1\|	retinoic acid receptor RXR-beta isoform X3 [Homo sapiens]	159	159	70%	1e-46	43.37%	XP_047275195.1
4 Select seq ref\|NP_001007369.2\|	photoreceptor-specific nuclear receptor [Danio rerio]	162	162	69%	2e-46	47.12%	NP_001007369.2
5 Select seq ref\|NP_001106668.2\|	nuclear receptor subfamily 2 group E member 1 [Rattus norvegicus]	159	159	71%	1e-45	39.90%	NP_001106668.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments