Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001404412.1 LIM homeobox transcription factor 1-alpha [Mus musculus] ... Query length: 382 aa

LIM/homeobox protein lim-6 ...

LIM/homeobox protein lim-6 [Caenorhabditis elegans]

316 aa protein

accession:NP_001256980.1

Alignment Sequence Identical proteins

LIM homeobox transcription factor 1 alpha, isoform C ...

LIM homeobox transcription factor 1 alpha, isoform C [Drosophila melanogaster]

639 aa protein

accession:NP_001261754.1

Alignment Sequence Identical proteins

LIM homeobox transcription factor 1-beta isoform X1 ...

LIM homeobox transcription factor 1-beta isoform X1 [Mus musculus]

408 aa protein

accession:XP_006497809.1

Alignment Sequence Identical proteins

LIM homeobox transcription factor 1, beta b ...

LIM homeobox transcription factor 1, beta b [Danio rerio]

375 aa protein

accession:NP_001020338.2

Alignment Sequence Identical proteins

Query: LIM homeobox transcription factor 1-alpha ...

LIM homeobox transcription factor 1-alpha [Mus musculus]

382 aa protein

accession:NP_001404412.1

Sequence Identical proteins

LIM homeobox transcription factor 1-alpha ...

LIM homeobox transcription factor 1-alpha [Homo sapiens]

382 aa protein

accession:NP_001167540.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001167540.1\|	LIM homeobox transcription factor 1-alpha [Homo sapiens]	777	777	100%	0.0	97.12%	NP_001167540.1
2 Select seq ref\|XP_006497809.1\|	LIM homeobox transcription factor 1-beta isoform X1 [Mus musculus]	508	508	100%	1e-179	67.18%	XP_006497809.1
3 Select seq ref\|NP_001020338.2\|	LIM homeobox transcription factor 1, beta b [Danio rerio]	476	476	100%	9e-168	64.58%	NP_001020338.2
4 Select seq ref\|NP_001261754.1\|	LIM homeobox transcription factor 1 alpha, isoform C [Drosophila melanogaster]	244	244	91%	1e-73	40.00%	NP_001261754.1
5 Select seq ref\|NP_001256980.1\|	LIM/homeobox protein lim-6 [Caenorhabditis elegans]	180	180	58%	1e-52	41.33%	NP_001256980.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments