Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001414361.1
pre-mRNA cleavage complex 2 protein Pcf11 [Rattus norvegicus]
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Query length:
1551 aa
DOMAINS: and other(s) domains
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Pcf11 cleavage and polyadenylation factor subunit, isoform B
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Pcf11 cleavage and polyadenylation factor subunit, isoform B [Drosophila melanogaster]
573 aa protein
accession:NP_001163153.1
pre-mRNA cleavage complex 2 protein Pcf11
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pre-mRNA cleavage complex 2 protein Pcf11 [Danio rerio]
1457 aa protein
accession:NP_001007308.1
pre-mRNA cleavage complex 2 protein Pcf11 isoform 3
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pre-mRNA cleavage complex 2 protein Pcf11 isoform 3 [Homo sapiens]
1555 aa protein
accession:NP_056969.2
pre-mRNA cleavage complex 2 protein Pcf11
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pre-mRNA cleavage complex 2 protein Pcf11 [Mus musculus]
1553 aa protein
accession:NP_083354.3
Query: pre-mRNA cleavage complex 2 protein Pcf11
...
pre-mRNA cleavage complex 2 protein Pcf11 [Rattus norvegicus]
1551 aa protein
accession:NP_001414361.1
pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
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pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 [Rattus norvegicus]
1867 aa protein
accession:XP_008757879.2
DOMAINS: and other(s) domains
...
Pcf11 cleavage and polyadenylation factor subunit, isoform B [Drosophila melanogaster]
573 aa protein
accession:NP_001163153.1
pre-mRNA cleavage complex 2 protein Pcf11 [Danio rerio]
1457 aa protein
accession:NP_001007308.1
pre-mRNA cleavage complex 2 protein Pcf11 isoform 3 [Homo sapiens]
1555 aa protein
accession:NP_056969.2
pre-mRNA cleavage complex 2 protein Pcf11 [Mus musculus]
1553 aa protein
accession:NP_083354.3
pre-mRNA cleavage complex 2 protein Pcf11 [Rattus norvegicus]
1551 aa protein
accession:NP_001414361.1
pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 [Rattus norvegicus]
1867 aa protein
accession:XP_008757879.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 3121 | 3121 | 100% | 0.0 | 98.20% | NP_083354.3 | |
| 2 | 2783 | 2783 | 100% | 0.0 | 93.77% | NP_056969.2 | |
| 3 | 1800 | 3175 | 100% | 0.0 | 99.88% | XP_008757879.2 | |
| 4 | 937 | 937 | 97% | 0.0 | 44.20% | NP_001007308.1 | |
| 5 | 163 | 163 | 13% | 1e-40 | 42.53% | NP_001163153.1 |