Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001839.2 collagen alpha-1(VI) chain precursor [Homo sapiens] ... Query length: 1028 aa

collagen alpha-2(VI) chain isoform 2C2 precursor ...

collagen alpha-2(VI) chain isoform 2C2 precursor [Homo sapiens]

1019 aa protein

accession:NP_001840.3

Alignment Sequence Identical proteins

collagen alpha-2(VI) chain isoform 1 precursor ...

collagen alpha-2(VI) chain isoform 1 precursor [Mus musculus]

1034 aa protein

accession:NP_666119.1

Alignment Sequence Identical proteins

collagen alpha-2(VI) chain isoform X3 ...

collagen alpha-2(VI) chain isoform X3 [Danio rerio]

1021 aa protein

accession:XP_021335548.1

Alignment Sequence Identical proteins

collagen alpha-2(VI) chain isoform X4 ...

collagen alpha-2(VI) chain isoform X4 [Danio rerio]

1015 aa protein

accession:XP_696164.2

Alignment Sequence Identical proteins

Query: collagen alpha-1(VI) chain precursor ...

collagen alpha-1(VI) chain precursor [Homo sapiens]

1028 aa protein

accession:NP_001839.2

Sequence Identical proteins

collagen alpha-1(VI) chain precursor ...

collagen alpha-1(VI) chain precursor [Mus musculus]

1025 aa protein

accession:NP_034063.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_034063.1\|	collagen alpha-1(VI) chain precursor [Mus musculus]	1701	1701	100%	0.0	89.98%	NP_034063.1
2 Select seq ref\|NP_001840.3\|	collagen alpha-2(VI) chain isoform 2C2 precursor [Homo sapiens]	459	459	93%	1e-143	34.57%	NP_001840.3
3 Select seq ref\|XP_021335548.1\|	collagen alpha-2(VI) chain isoform X3 [Danio rerio]	422	422	96%	5e-130	31.52%	XP_021335548.1
4 Select seq ref\|NP_666119.1\|	collagen alpha-2(VI) chain isoform 1 precursor [Mus musculus]	448	448	96%	2e-139	33.94%	NP_666119.1
5 Select seq ref\|XP_696164.2\|	collagen alpha-2(VI) chain isoform X4 [Danio rerio]	422	475	97%	6e-130	31.40%	XP_696164.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments