Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_002109.2
HLA class II histocompatibility antigen, DM beta chain precursor [Homo sapiens]
...
Query length:
263 aa
DOMAINS: and other(s) domains
...
RT1 class Ia, locus A2 isoform X1
...
RT1 class Ia, locus A2 isoform X1 [Rattus norvegicus]
404 aa protein
accession:XP_063135035.1
HLA class II histocompatibility antigen, DP beta 1 chain precursor
...
HLA class II histocompatibility antigen, DP beta 1 chain precursor [Homo sapiens]
258 aa protein
accession:NP_002112.3
HLA class II histocompatibility antigen, DP beta 1 chain isoform X1
...
HLA class II histocompatibility antigen, DP beta 1 chain isoform X1 [Homo sapiens]
154 aa protein
accession:XP_054184470.1
HLA class II histocompatibility antigen, DO beta chain precursor
...
HLA class II histocompatibility antigen, DO beta chain precursor [Homo sapiens]
273 aa protein
accession:NP_002111.1
Query: HLA class II histocompatibility antigen, DM beta chain precursor
...
HLA class II histocompatibility antigen, DM beta chain precursor [Homo sapiens]
263 aa protein
accession:NP_002109.2
RT1 class II, DM beta isoform X1
...
RT1 class II, DM beta isoform X1 [Rattus norvegicus]
279 aa protein
accession:XP_063135087.1
DOMAINS: and other(s) domains
...
RT1 class Ia, locus A2 isoform X1 [Rattus norvegicus]
404 aa protein
accession:XP_063135035.1
HLA class II histocompatibility antigen, DP beta 1 chain precursor [Homo sapiens]
258 aa protein
accession:NP_002112.3
HLA class II histocompatibility antigen, DP beta 1 chain isoform X1 [Homo sapiens]
154 aa protein
accession:XP_054184470.1
HLA class II histocompatibility antigen, DO beta chain precursor [Homo sapiens]
273 aa protein
accession:NP_002111.1
HLA class II histocompatibility antigen, DM beta chain precursor [Homo sapiens]
263 aa protein
accession:NP_002109.2
RT1 class II, DM beta isoform X1 [Rattus norvegicus]
279 aa protein
accession:XP_063135087.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 395 | 395 | 93% | 2e-139 | 73.98% | XP_063135087.1 | |
| 2 | 82.4 | 82.4 | 82% | 1e-17 | 26.20% | NP_002112.3 | |
| 3 | 79.7 | 79.7 | 88% | 1e-16 | 26.16% | NP_002111.1 | |
| 4 | 75.9 | 75.9 | 54% | 4e-16 | 32.41% | XP_054184470.1 | |
| 5 | 79.7 | 79.7 | 58% | 4e-16 | 31.90% | XP_063135035.1 |