Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_012395.1
DNA-directed RNA polymerase II subunit RPB4 [Saccharomyces cerevisiae S288C]
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Query length:
221 aa
DOMAINS: and other(s) domains
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Query: DNA-directed RNA polymerase II subunit RPB4
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DNA-directed RNA polymerase II subunit RPB4 [Saccharomyces cerevisiae S288C]
221 aa protein
accession:NP_012395.1
RNA polymerase Rpb4/RPC9 core domain-containing protein
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RNA polymerase Rpb4/RPC9 core domain-containing protein [Caenorhabditis elegans]
144 aa protein
accession:NP_001370397.1
DNA-directed RNA polymerase II subunit RPB4
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DNA-directed RNA polymerase II subunit RPB4 [Danio rerio]
145 aa protein
accession:NP_001002317.2
DNA-directed RNA polymerase II subunit RPB4
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DNA-directed RNA polymerase II subunit RPB4 [Homo sapiens]
142 aa protein
accession:NP_004796.1
RNA polymerase II subunit D
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RNA polymerase II subunit D [Drosophila melanogaster]
139 aa protein
accession:NP_001014633.2
DNA-directed RNA polymerase II subunit 4
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DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum AX4]
155 aa protein
accession:XP_640235.1
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase II subunit RPB4 [Saccharomyces cerevisiae S288C]
221 aa protein
accession:NP_012395.1
RNA polymerase Rpb4/RPC9 core domain-containing protein [Caenorhabditis elegans]
144 aa protein
accession:NP_001370397.1
DNA-directed RNA polymerase II subunit RPB4 [Danio rerio]
145 aa protein
accession:NP_001002317.2
DNA-directed RNA polymerase II subunit RPB4 [Homo sapiens]
142 aa protein
accession:NP_004796.1
RNA polymerase II subunit D [Drosophila melanogaster]
139 aa protein
accession:NP_001014633.2
DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum AX4]
155 aa protein
accession:XP_640235.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 73.2 | 73.2 | 34% | 4e-15 | 45.45% | NP_001370397.1 | |
| 2 | 69.3 | 69.3 | 30% | 1e-13 | 47.06% | NP_001002317.2 | |
| 3 | 68.6 | 68.6 | 30% | 2e-13 | 47.06% | NP_004796.1 | |
| 4 | 63.2 | 63.2 | 33% | 3e-11 | 45.95% | XP_640235.1 | |
| 5 | 62.0 | 62.0 | 34% | 6e-11 | 38.96% | NP_001014633.2 |