Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_014893.1 cleavage polyadenylation factor subunit CLP1 [Saccharomyces cerevisiae S288C] ... Query length: 445 aa

Query: cleavage polyadenylation factor subunit CLP1 ...

cleavage polyadenylation factor subunit CLP1 [Saccharomyces cerevisiae S288C]

445 aa protein

accession:NP_014893.1

Sequence Identical proteins

cleavage and polyadenylation specificity factor complex subunit ...

cleavage and polyadenylation specificity factor complex subunit [Schizosaccharomyces pombe]

456 aa protein

accession:NP_593741.1

Alignment Sequence Identical proteins

CLP-similar protein 3 ...

CLP-similar protein 3 [Arabidopsis thaliana]

444 aa protein

accession:NP_001319471.1

Alignment Sequence Identical proteins

protein CLP1 homolog ...

protein CLP1 homolog [Glycine max]

432 aa protein

accession:XP_003536785.1

Alignment Sequence Identical proteins

pre-mRNA cleavage complex subunit ...

pre-mRNA cleavage complex subunit [Dictyostelium discoideum AX4]

459 aa protein

accession:XP_638095.1

Alignment Sequence Identical proteins

polyribonucleotide 5'-hydroxyl-kinase Clp1 ...

polyribonucleotide 5'-hydroxyl-kinase Clp1 [Danio rerio]

443 aa protein

accession:NP_001333167.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_593741.1\|	cleavage and polyadenylation specificity factor complex subunit [Schizosaccharomyces pombe]	185	185	94%	4e-52	30.57%	NP_593741.1
2 Select seq ref\|NP_001319471.1\|	CLP-similar protein 3 [Arabidopsis thaliana]	155	155	96%	6e-41	29.80%	NP_001319471.1
3 Select seq ref\|XP_638095.1\|	pre-mRNA cleavage complex subunit [Dictyostelium discoideum AX4]	142	142	92%	4e-36	27.15%	XP_638095.1
4 Select seq ref\|XP_003536785.1\|	protein CLP1 homolog [Glycine max]	137	137	93%	8e-35	27.46%	XP_003536785.1
5 Select seq ref\|NP_001333167.1\|	polyribonucleotide 5'-hydroxyl-kinase Clp1 [Danio rerio]	135	135	93%	7e-34	25.58%	NP_001333167.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments