Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_036098.1 proteasome subunit alpha type-6 isoform 1 [Mus musculus] ... Query length: 246 aa

proteasome alpha1 subunit-related, isoform B ...

proteasome alpha1 subunit-related, isoform B [Drosophila melanogaster]

244 aa protein

accession:NP_001163078.1

Alignment Sequence Identical proteins

proteasome subunit alpha type-6 ...

proteasome subunit alpha type-6 [Danio rerio]

246 aa protein

accession:NP_001002589.1

Alignment Sequence Identical proteins

proteasome subunit alpha type-6 isoform a ...

proteasome subunit alpha type-6 isoform a [Homo sapiens]

246 aa protein

accession:NP_002782.1

Alignment Sequence Identical proteins

Query: proteasome subunit alpha type-6 isoform 1 ...

proteasome subunit alpha type-6 isoform 1 [Mus musculus]

246 aa protein

accession:NP_036098.1

Sequence Identical proteins

proteasome subunit alpha type-6 isoform 2 ...

proteasome subunit alpha type-6 isoform 2 [Mus musculus]

227 aa protein

accession:NP_001297512.1

Alignment Sequence Identical proteins

proteasome subunit alpha type-6 isoform X1 ...

proteasome subunit alpha type-6 isoform X1 [Rattus norvegicus]

227 aa protein

accession:XP_006240160.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_002782.1\|	proteasome subunit alpha type-6 isoform a [Homo sapiens]	511	511	100%	0.0	99.59%	NP_002782.1
2 Select seq ref\|NP_001002589.1\|	proteasome subunit alpha type-6 [Danio rerio]	484	484	100%	6e-175	90.65%	NP_001002589.1
3 Select seq ref\|NP_001297512.1\|	proteasome subunit alpha type-6 isoform 2 [Mus musculus]	458	458	89%	6e-165	99.55%	NP_001297512.1
4 Select seq ref\|XP_006240160.1\|	proteasome subunit alpha type-6 isoform X1 [Rattus norvegicus]	456	456	89%	3e-164	99.10%	XP_006240160.1
5 Select seq ref\|NP_001163078.1\|	proteasome alpha1 subunit-related, isoform B [Drosophila melanogaster]	349	349	100%	1e-121	66.67%	NP_001163078.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments