Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_071973.2 hypoxia-inducible factor 3-alpha isoform 1 [Rattus norvegicus] ... Query length: 662 aa

hypoxia inducible factor 1 subunit alpha, like isoform X1 ...

hypoxia inducible factor 1 subunit alpha, like isoform X1 [Danio rerio]

619 aa protein

accession:XP_005157629.2

Alignment Sequence Identical proteins

hypoxia-inducible factor 3-alpha isoform a ...

hypoxia-inducible factor 3-alpha isoform a [Homo sapiens]

667 aa protein

accession:NP_690007.1

Alignment Sequence Identical proteins

hypoxia-inducible factor 3-alpha isoform 2 ...

hypoxia-inducible factor 3-alpha isoform 2 [Mus musculus]

662 aa protein

accession:NP_058564.2

Alignment Sequence Identical proteins

Query: hypoxia-inducible factor 3-alpha isoform 1 ...

hypoxia-inducible factor 3-alpha isoform 1 [Rattus norvegicus]

662 aa protein

accession:NP_071973.2

Sequence Identical proteins

hypoxia-inducible factor 3-alpha isoform 2 ...

hypoxia-inducible factor 3-alpha isoform 2 [Rattus norvegicus]

664 aa protein

accession:NP_001375441.1

Alignment Sequence Identical proteins

hypoxia-inducible factor 3-alpha isoform X1 ...

hypoxia-inducible factor 3-alpha isoform X1 [Rattus norvegicus]

608 aa protein

accession:XP_038945466.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001375441.1\|	hypoxia-inducible factor 3-alpha isoform 2 [Rattus norvegicus]	1326	1326	99%	0.0	100.00%	NP_001375441.1
2 Select seq ref\|NP_058564.2\|	hypoxia-inducible factor 3-alpha isoform 2 [Mus musculus]	1185	1185	100%	0.0	94.41%	NP_058564.2
3 Select seq ref\|NP_690007.1\|	hypoxia-inducible factor 3-alpha isoform a [Homo sapiens]	1034	1034	99%	0.0	80.75%	NP_690007.1
4 Select seq ref\|XP_005157629.2\|	hypoxia inducible factor 1 subunit alpha, like isoform X1 [Danio rerio]	454	454	75%	6e-151	45.71%	XP_005157629.2
5 Select seq ref\|XP_038945466.1\|	hypoxia-inducible factor 3-alpha isoform X1 [Rattus norvegicus]	1233	1233	91%	0.0	100.00%	XP_038945466.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments