Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_077224.1 nonsense-mediated mRNA decay factor SMG8 [Mus musculus] ... Query length: 991 aa

uncharacterized protein LOC100795370 ...

uncharacterized protein LOC100795370 [Glycine max]

1213 aa protein

accession:XP_006594958.1

Alignment Sequence Identical proteins

Nonsense-mediated mRNA decay factor SMG8 ...

Nonsense-mediated mRNA decay factor SMG8 [Caenorhabditis elegans]

873 aa protein

accession:NP_497003.3

Alignment Sequence Identical proteins

uncharacterized protein Dmel_CG6729 ...

uncharacterized protein Dmel_CG6729 [Drosophila melanogaster]

944 aa protein

accession:NP_609449.1

Alignment Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG8 ...

nonsense-mediated mRNA decay factor SMG8 [Danio rerio]

916 aa protein

accession:XP_695811.2

Alignment Sequence Identical proteins

Query: nonsense-mediated mRNA decay factor SMG8 ...

nonsense-mediated mRNA decay factor SMG8 [Mus musculus]

991 aa protein

accession:NP_077224.1

Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG8 ...

nonsense-mediated mRNA decay factor SMG8 [Homo sapiens]

991 aa protein

accession:NP_060619.4

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_060619.4\|	nonsense-mediated mRNA decay factor SMG8 [Homo sapiens]	1978	1978	100%	0.0	96.06%	NP_060619.4
2 Select seq ref\|XP_695811.2\|	nonsense-mediated mRNA decay factor SMG8 [Danio rerio]	1224	1224	95%	0.0	66.08%	XP_695811.2
3 Select seq ref\|NP_609449.1\|	uncharacterized protein Dmel_CG6729 [Drosophila melanogaster]	270	270	78%	2e-75	27.24%	NP_609449.1
4 Select seq ref\|NP_497003.3\|	Nonsense-mediated mRNA decay factor SMG8 [Caenorhabditis elegans]	117	117	42%	2e-25	25.81%	NP_497003.3
5 Select seq ref\|XP_006594958.1\|	uncharacterized protein LOC100795370 [Glycine max]	98.6	138	27%	2e-19	31.58%	XP_006594958.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments