Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_116581.3
DNA-directed RNA polymerase II subunit RPB11-b1 [Homo sapiens]
...
Query length:
115 aa
DOMAINS: and other(s) domains
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DNA-directed RNA polymerases II, IV and V subunit 11
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DNA-directed RNA polymerases II, IV and V subunit 11 [Glycine max]
116 aa protein
accession:XP_003534400.1
putative DNA-directed RNA polymerase II subunit RPB11
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putative DNA-directed RNA polymerase II subunit RPB11 [Caenorhabditis elegans]
122 aa protein
accession:NP_496942.1
RNA polymerase II subunit J
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RNA polymerase II subunit J [Drosophila melanogaster]
117 aa protein
accession:NP_609836.1
DNA-directed RNA polymerase II subunit RPB11-a
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DNA-directed RNA polymerase II subunit RPB11-a [Danio rerio]
117 aa protein
accession:NP_001019571.1
Query: DNA-directed RNA polymerase II subunit RPB11-b1
...
DNA-directed RNA polymerase II subunit RPB11-b1 [Homo sapiens]
115 aa protein
accession:NP_116581.3
DNA-directed RNA polymerase II subunit RPB11-b2
...
DNA-directed RNA polymerase II subunit RPB11-b2 [Homo sapiens]
115 aa protein
accession:NP_001091084.2
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerases II, IV and V subunit 11 [Glycine max]
116 aa protein
accession:XP_003534400.1
putative DNA-directed RNA polymerase II subunit RPB11 [Caenorhabditis elegans]
122 aa protein
accession:NP_496942.1
RNA polymerase II subunit J [Drosophila melanogaster]
117 aa protein
accession:NP_609836.1
DNA-directed RNA polymerase II subunit RPB11-a [Danio rerio]
117 aa protein
accession:NP_001019571.1
DNA-directed RNA polymerase II subunit RPB11-b1 [Homo sapiens]
115 aa protein
accession:NP_116581.3
DNA-directed RNA polymerase II subunit RPB11-b2 [Homo sapiens]
115 aa protein
accession:NP_001091084.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 232 | 232 | 100% | 1e-79 | 99.13% | NP_001091084.2 | |
| 2 | 204 | 204 | 93% | 1e-68 | 90.83% | NP_001019571.1 | |
| 3 | 174 | 174 | 93% | 1e-56 | 75.23% | NP_609836.1 | |
| 4 | 151 | 151 | 93% | 2e-47 | 66.67% | NP_496942.1 | |
| 5 | 117 | 117 | 94% | 4e-34 | 49.09% | XP_003534400.1 |