Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_498637.3 Ligand-gated ion channel 50 [Caenorhabditis elegans] ... Query length: 491 aa

gamma-aminobutyric acid receptor subunit theta isoform X1 ...

gamma-aminobutyric acid receptor subunit theta isoform X1 [Homo sapiens]

406 aa protein

accession:XP_054189321.1

Alignment Sequence Identical proteins

glycine receptor, alpha 4b precursor ...

glycine receptor, alpha 4b precursor [Danio rerio]

492 aa protein

accession:NP_001189440.1

Alignment Sequence Identical proteins

glycine receptor subunit beta isoform 7 ...

glycine receptor subunit beta isoform 7 [Mus musculus]

398 aa protein

accession:NP_001397075.1

Alignment Sequence Identical proteins

Glutamate-gated chloride channel subunit alpha, isoform O ...

Glutamate-gated chloride channel subunit alpha, isoform O [Drosophila melanogaster]

455 aa protein

accession:NP_001287409.1

Alignment Sequence Identical proteins

Query: Ligand-gated ion channel 50 ...

Ligand-gated ion channel 50 [Caenorhabditis elegans]

491 aa protein

accession:NP_498637.3

Sequence Identical proteins

Ligand-Gated ion Channel ...

Ligand-Gated ion Channel [Caenorhabditis elegans]

493 aa protein

accession:NP_001343648.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001343648.1\|	Ligand-Gated ion Channel [Caenorhabditis elegans]	311	311	95%	4e-100	36.08%	NP_001343648.1
2 Select seq ref\|NP_001189440.1\|	glycine receptor, alpha 4b precursor [Danio rerio]	197	197	90%	4e-56	28.63%	NP_001189440.1
3 Select seq ref\|NP_001287409.1\|	Glutamate-gated chloride channel subunit alpha, isoform O [Drosophila melanogaster]	184	184	92%	6e-52	28.39%	NP_001287409.1
4 Select seq ref\|XP_054189321.1\|	gamma-aminobutyric acid receptor subunit theta isoform X1 [Homo sapiens]	182	182	61%	1e-51	31.70%	XP_054189321.1
5 Select seq ref\|NP_001397075.1\|	glycine receptor subunit beta isoform 7 [Mus musculus]	181	181	83%	5e-51	27.42%	NP_001397075.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments