Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_499239.1 General transcription factor IIH subunit 2 [Caenorhabditis elegans] ... Query length: 376 aa

Query: General transcription factor IIH subunit 2 ...

General transcription factor IIH subunit 2 [Caenorhabditis elegans]

376 aa protein

accession:NP_499239.1

Sequence Identical proteins

general transcription factor IIH subunit 2 isoform a ...

general transcription factor IIH subunit 2 isoform a [Homo sapiens]

395 aa protein

accession:NP_001351496.1

Alignment Sequence Identical proteins

suppressor of stem-loop mutation, isoform B ...

suppressor of stem-loop mutation, isoform B [Drosophila melanogaster]

438 aa protein

accession:NP_001262227.1

Alignment Sequence Identical proteins

general transcription factor IIH subunit 2 ...

general transcription factor IIH subunit 2 [Glycine max]

419 aa protein

accession:XP_040862568.1

Alignment Sequence Identical proteins

TFIIH subunit ...

TFIIH subunit [Dictyostelium discoideum AX4]

461 aa protein

accession:XP_645146.1

Alignment Sequence Identical proteins

transcription factor TFIIH complex subunit Ssl1 ...

transcription factor TFIIH complex subunit Ssl1 [Schizosaccharomyces pombe]

421 aa protein

accession:NP_587800.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001351496.1\|	general transcription factor IIH subunit 2 isoform a [Homo sapiens]	316	316	99%	8e-105	43.19%	NP_001351496.1
2 Select seq ref\|NP_001262227.1\|	suppressor of stem-loop mutation, isoform B [Drosophila melanogaster]	283	283	100%	3e-91	37.16%	NP_001262227.1
3 Select seq ref\|XP_040862568.1\|	general transcription factor IIH subunit 2 [Glycine max]	264	264	97%	3e-84	39.64%	XP_040862568.1
4 Select seq ref\|NP_587800.1\|	transcription factor TFIIH complex subunit Ssl1 [Schizosaccharomyces pombe]	247	247	98%	1e-77	35.95%	NP_587800.1
5 Select seq ref\|XP_645146.1\|	TFIIH subunit [Dictyostelium discoideum AX4]	244	244	99%	4e-76	32.48%	XP_645146.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments