Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_542418.1 regulator of nonsense transcripts 3A isoform hUpf3pdelta [Homo sapiens] ... Query length: 443 aa

regulator of nonsense transcripts UPF3 isoform X8 ...

regulator of nonsense transcripts UPF3 isoform X8 [Glycine max]

529 aa protein

accession:XP_040872726.1

Alignment Sequence Identical proteins

Upf3, isoform D ...

Upf3, isoform D [Drosophila melanogaster]

492 aa protein

accession:NP_611844.3

Alignment Sequence Identical proteins

regulator of nonsense transcripts 3B isoform X3 ...

regulator of nonsense transcripts 3B isoform X3 [Rattus norvegicus]

417 aa protein

accession:XP_063136060.1

Alignment Sequence Identical proteins

regulator of nonsense transcripts 3A isoform X2 ...

regulator of nonsense transcripts 3A isoform X2 [Danio rerio]

452 aa protein

accession:XP_068079539.1

Alignment Sequence Identical proteins

Query: regulator of nonsense transcripts 3A isoform hUpf3pdelta ...

regulator of nonsense transcripts 3A isoform hUpf3pdelta [Homo sapiens]

443 aa protein

accession:NP_542418.1

Sequence Identical proteins

regulator of nonsense transcripts 3A isoform X6 ...

regulator of nonsense transcripts 3A isoform X6 [Homo sapiens]

275 aa protein

accession:XP_047286504.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047286504.1\|	regulator of nonsense transcripts 3A isoform X6 [Homo sapiens]	532	532	62%	0.0	100.00%	XP_047286504.1
2 Select seq ref\|XP_068079539.1\|	regulator of nonsense transcripts 3A isoform X2 [Danio rerio]	271	271	98%	1e-85	48.15%	XP_068079539.1
3 Select seq ref\|XP_063136060.1\|	regulator of nonsense transcripts 3B isoform X3 [Rattus norvegicus]	204	204	49%	3e-60	46.07%	XP_063136060.1
4 Select seq ref\|NP_611844.3\|	Upf3, isoform D [Drosophila melanogaster]	84.0	84.0	20%	2e-16	40.43%	NP_611844.3
5 Select seq ref\|XP_040872726.1\|	regulator of nonsense transcripts UPF3 isoform X8 [Glycine max]	68.6	68.6	28%	2e-11	28.12%	XP_040872726.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments