Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_565794.1
hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]
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Query length:
116 aa
DOMAINS: and other(s) domains
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Mediator of RNA polymerase II transcription subunit 13
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Mediator of RNA polymerase II transcription subunit 13 [Caenorhabditis elegans]
2862 aa protein
accession:NP_495866.2
transcription elongation regulator 1 isoform 11
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transcription elongation regulator 1 isoform 11 [Homo sapiens]
1047 aa protein
accession:NP_001387023.1
transcription elongation regulator 1 isoform X5
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transcription elongation regulator 1 isoform X5 [Mus musculus]
1085 aa protein
accession:XP_030106405.1
unconventional myosin-XVIIIa isoform X3
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unconventional myosin-XVIIIa isoform X3 [Danio rerio]
2482 aa protein
accession:XP_068080097.1
Query: hydroxyproline-rich glycoprotein family protein
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hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]
116 aa protein
accession:NP_565794.1
Glycine-rich protein family
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Glycine-rich protein family [Arabidopsis thaliana]
217 aa protein
accession:NP_566179.1
DOMAINS: and other(s) domains
...
Mediator of RNA polymerase II transcription subunit 13 [Caenorhabditis elegans]
2862 aa protein
accession:NP_495866.2
transcription elongation regulator 1 isoform 11 [Homo sapiens]
1047 aa protein
accession:NP_001387023.1
transcription elongation regulator 1 isoform X5 [Mus musculus]
1085 aa protein
accession:XP_030106405.1
unconventional myosin-XVIIIa isoform X3 [Danio rerio]
2482 aa protein
accession:XP_068080097.1
hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]
116 aa protein
accession:NP_565794.1
Glycine-rich protein family [Arabidopsis thaliana]
217 aa protein
accession:NP_566179.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 53.9 | 53.9 | 89% | 2e-08 | 39.72% | NP_566179.1 | |
| 2 | 39.3 | 39.3 | 72% | 0.004 | 34.12% | NP_001387023.1 | |
| 3 | 38.5 | 38.5 | 69% | 0.007 | 32.18% | NP_495866.2 | |
| 4 | 34.7 | 34.7 | 58% | 0.16 | 32.89% | XP_068080097.1 | |
| 5 | 34.3 | 34.3 | 77% | 0.23 | 30.69% | XP_030106405.1 |