Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_571565.1
major histocompatibility complex class II integral membrane alpha chain precursor [Danio rerio]
...
Query length:
243 aa
DOMAINS: and other(s) domains
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HLA class II histocompatibility antigen, DQ alpha 1 chain precursor
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HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]
255 aa protein
accession:NP_002113.2
histocompatibility 2, class II antigen A, alpha precursor
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histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
Query: major histocompatibility complex class II integral membrane alpha chain precursor
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major histocompatibility complex class II integral membrane alpha chain precursor [Danio rerio]
243 aa protein
accession:NP_571565.1
uncharacterized protein LOC368614 precursor
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uncharacterized protein LOC368614 precursor [Danio rerio]
236 aa protein
accession:NP_001007206.1
uncharacterized protein LOC368748 precursor
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uncharacterized protein LOC368748 precursor [Danio rerio]
235 aa protein
accession:NP_001007049.3
mamu class II histocompatibility antigen, DR alpha chain
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mamu class II histocompatibility antigen, DR alpha chain [Danio rerio]
236 aa protein
accession:XP_005167290.2
DOMAINS: and other(s) domains
...
HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]
255 aa protein
accession:NP_002113.2
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
major histocompatibility complex class II integral membrane alpha chain precursor [Danio rerio]
243 aa protein
accession:NP_571565.1
uncharacterized protein LOC368614 precursor [Danio rerio]
236 aa protein
accession:NP_001007206.1
uncharacterized protein LOC368748 precursor [Danio rerio]
235 aa protein
accession:NP_001007049.3
mamu class II histocompatibility antigen, DR alpha chain [Danio rerio]
236 aa protein
accession:XP_005167290.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 285 | 285 | 96% | 1e-96 | 59.75% | NP_001007206.1 | |
| 2 | 123 | 123 | 80% | 5e-33 | 33.00% | NP_002113.2 | |
| 3 | 120 | 120 | 80% | 7e-32 | 32.32% | NP_034508.2 | |
| 4 | 265 | 265 | 96% | 1e-88 | 52.97% | XP_005167290.2 | |
| 5 | 255 | 255 | 96% | 7e-85 | 53.81% | NP_001007049.3 |