Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_593784.1
nonsense-mediated decay protein Upf2 [Schizosaccharomyces pombe]
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Query length:
1049 aa
DOMAINS: and other(s) domains
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Query: nonsense-mediated decay protein Upf2
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nonsense-mediated decay protein Upf2 [Schizosaccharomyces pombe]
1049 aa protein
accession:NP_593784.1
regulator of nonsense transcripts UPF2
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regulator of nonsense transcripts UPF2 [Arabidopsis thaliana]
1181 aa protein
accession:NP_181459.4
LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2
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LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Glycine max]
1187 aa protein
accession:XP_003546565.2
regulator of nonsense transcripts 2 isoform X3
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regulator of nonsense transcripts 2 isoform X3 [Rattus norvegicus]
867 aa protein
accession:XP_038951857.1
regulator of nonsense transcripts 2 isoform X3
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regulator of nonsense transcripts 2 isoform X3 [Homo sapiens]
1270 aa protein
accession:XP_047280942.1
regulator of nonsense transcripts 2 isoform X2
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regulator of nonsense transcripts 2 isoform X2 [Mus musculus]
1268 aa protein
accession:XP_006497549.1
DOMAINS: and other(s) domains
...
nonsense-mediated decay protein Upf2 [Schizosaccharomyces pombe]
1049 aa protein
accession:NP_593784.1
regulator of nonsense transcripts UPF2 [Arabidopsis thaliana]
1181 aa protein
accession:NP_181459.4
LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Glycine max]
1187 aa protein
accession:XP_003546565.2
regulator of nonsense transcripts 2 isoform X3 [Rattus norvegicus]
867 aa protein
accession:XP_038951857.1
regulator of nonsense transcripts 2 isoform X3 [Homo sapiens]
1270 aa protein
accession:XP_047280942.1
regulator of nonsense transcripts 2 isoform X2 [Mus musculus]
1268 aa protein
accession:XP_006497549.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 322 | 322 | 96% | 6e-92 | 26.19% | NP_181459.4 | |
| 2 | 318 | 318 | 99% | 2e-90 | 24.98% | XP_003546565.2 | |
| 3 | 218 | 218 | 41% | 2e-57 | 29.56% | XP_038951857.1 | |
| 4 | 219 | 275 | 54% | 4e-57 | 29.78% | XP_047280942.1 | |
| 5 | 219 | 275 | 54% | 5e-57 | 29.78% | XP_006497549.1 |