Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_594223.2 transcription factor TFIIH complex subunit Tfb1 [Schizosaccharomyces pombe] ... Query length: 533 aa

transcription factor B1, isoform D ...

transcription factor B1, isoform D [Drosophila melanogaster]

585 aa protein

accession:NP_001246321.1

Alignment Sequence Identical proteins

general transcription factor IIH subunit 1 ...

general transcription factor IIH subunit 1 [Danio rerio]

550 aa protein

accession:NP_001004596.1

Alignment Sequence Identical proteins

general transcription factor IIH subunit 1 ...

general transcription factor IIH subunit 1 [Homo sapiens]

548 aa protein

accession:NP_001135779.1

Alignment Sequence Identical proteins

general transcription factor IIH subunit 1 ...

general transcription factor IIH subunit 1 [Rattus norvegicus]

547 aa protein

accession:NP_001386573.1

Alignment Sequence Identical proteins

Query: transcription factor TFIIH complex subunit Tfb1 ...

transcription factor TFIIH complex subunit Tfb1 [Schizosaccharomyces pombe]

533 aa protein

accession:NP_594223.2

Sequence Identical proteins

TFIIH/NER complex subunit TFB1 ...

TFIIH/NER complex subunit TFB1 [Saccharomyces cerevisiae S288C]

642 aa protein

accession:NP_010597.3

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_010597.3\|	TFIIH/NER complex subunit TFB1 [Saccharomyces cerevisiae S288C]	165	165	84%	1e-42	28.01%	NP_010597.3
2 Select seq ref\|NP_001246321.1\|	transcription factor B1, isoform D [Drosophila melanogaster]	87.8	87.8	51%	8e-17	27.76%	NP_001246321.1
3 Select seq ref\|NP_001004596.1\|	general transcription factor IIH subunit 1 [Danio rerio]	76.6	76.6	87%	2e-13	22.75%	NP_001004596.1
4 Select seq ref\|NP_001135779.1\|	general transcription factor IIH subunit 1 [Homo sapiens]	71.6	71.6	87%	1e-11	21.48%	NP_001135779.1
5 Select seq ref\|NP_001386573.1\|	general transcription factor IIH subunit 1 [Rattus norvegicus]	68.9	68.9	42%	6e-11	24.79%	NP_001386573.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments