Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_594984.1 CCR4-NOT complex subunit Rcd1 [Schizosaccharomyces pombe] ... Query length: 283 aa

protein CAF40, putative ...

protein CAF40, putative [Plasmodium falciparum 3D7]

652 aa protein

accession:XP_001351634.1

Alignment Sequence Identical proteins

Query: CCR4-NOT complex subunit Rcd1 ...

CCR4-NOT complex subunit Rcd1 [Schizosaccharomyces pombe]

283 aa protein

accession:NP_594984.1

Sequence Identical proteins

CCR4-NOT transcription complex subunit 9 ...

CCR4-NOT transcription complex subunit 9 [Rattus norvegicus]

299 aa protein

accession:NP_001009357.1

Alignment Sequence Identical proteins

CCR4-NOT transcription complex subunit 9 ...

CCR4-NOT transcription complex subunit 9 [Danio rerio]

298 aa protein

accession:NP_999925.1

Alignment Sequence Identical proteins

CCR4-NOT transcription complex subunit 9 isoform X1 ...

CCR4-NOT transcription complex subunit 9 isoform X1 [Mus musculus]

245 aa protein

accession:XP_006496234.1

Alignment Sequence Identical proteins

CCR4-NOT transcription complex subunit 9 ...

CCR4-NOT transcription complex subunit 9 [Glycine max]

325 aa protein

accession:XP_003532138.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001009357.1\|	CCR4-NOT transcription complex subunit 9 [Rattus norvegicus]	394	394	95%	5e-138	70.63%	NP_001009357.1
2 Select seq ref\|NP_999925.1\|	CCR4-NOT transcription complex subunit 9 [Danio rerio]	385	385	95%	1e-134	69.89%	NP_999925.1
3 Select seq ref\|XP_003532138.1\|	CCR4-NOT transcription complex subunit 9 [Glycine max]	362	362	92%	4e-125	68.20%	XP_003532138.1
4 Select seq ref\|XP_006496234.1\|	CCR4-NOT transcription complex subunit 9 isoform X1 [Mus musculus]	357	357	83%	3e-124	72.88%	XP_006496234.1
5 Select seq ref\|XP_001351634.1\|	protein CAF40, putative [Plasmodium falciparum 3D7]	369	369	94%	4e-123	67.78%	XP_001351634.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments