Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_648990.1
U4-U6 small nuclear riboprotein factor 60K [Drosophila melanogaster]
...
Query length:
553 aa
DOMAINS: and other(s) domains
...
Pre-mRNA processing factor 4 (PRP4)-like domain-containing protein
...
Pre-mRNA processing factor 4 (PRP4)-like domain-containing protein [Caenorhabditis elegans]
496 aa protein
accession:NP_492363.1
Query: U4-U6 small nuclear riboprotein factor 60K
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U4-U6 small nuclear riboprotein factor 60K [Drosophila melanogaster]
553 aa protein
accession:NP_648990.1
U4/U6 small nuclear ribonucleoprotein Prp4
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U4/U6 small nuclear ribonucleoprotein Prp4 [Danio rerio]
507 aa protein
accession:NP_956049.1
U4/U6 small nuclear ribonucleoprotein Prp4
...
U4/U6 small nuclear ribonucleoprotein Prp4 [Mus musculus]
521 aa protein
accession:NP_081573.1
U4/U6 small nuclear ribonucleoprotein Prp4
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U4/U6 small nuclear ribonucleoprotein Prp4 [Rattus norvegicus]
521 aa protein
accession:NP_001100129.1
U4/U6 small nuclear ribonucleoprotein Prp4 isoform 2
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U4/U6 small nuclear ribonucleoprotein Prp4 isoform 2 [Homo sapiens]
521 aa protein
accession:NP_001231855.1
DOMAINS: and other(s) domains
...
Pre-mRNA processing factor 4 (PRP4)-like domain-containing protein [Caenorhabditis elegans]
496 aa protein
accession:NP_492363.1
U4-U6 small nuclear riboprotein factor 60K [Drosophila melanogaster]
553 aa protein
accession:NP_648990.1
U4/U6 small nuclear ribonucleoprotein Prp4 [Danio rerio]
507 aa protein
accession:NP_956049.1
U4/U6 small nuclear ribonucleoprotein Prp4 [Mus musculus]
521 aa protein
accession:NP_081573.1
U4/U6 small nuclear ribonucleoprotein Prp4 [Rattus norvegicus]
521 aa protein
accession:NP_001100129.1
U4/U6 small nuclear ribonucleoprotein Prp4 isoform 2 [Homo sapiens]
521 aa protein
accession:NP_001231855.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 563 | 563 | 99% | 0.0 | 50.91% | NP_956049.1 | |
| 2 | 548 | 548 | 98% | 0.0 | 50.55% | NP_081573.1 | |
| 3 | 547 | 547 | 98% | 0.0 | 50.55% | NP_001100129.1 | |
| 4 | 547 | 547 | 98% | 0.0 | 50.55% | NP_001231855.1 | |
| 5 | 408 | 408 | 86% | 2e-136 | 43.06% | NP_492363.1 |