Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_733256.2 pre-mRNA processing factor 39, isoform B [Drosophila melanogaster] ... Query length: 1066 aa

Suppressor of forked domain-containing protein ...

Suppressor of forked domain-containing protein [Caenorhabditis elegans]

710 aa protein

accession:NP_504495.1

Alignment Sequence Identical proteins

pre-mRNA-processing factor 39 ...

pre-mRNA-processing factor 39 [Danio rerio]

707 aa protein

accession:XP_002664507.1

Alignment Sequence Identical proteins

pre-mRNA-processing factor 39 ...

pre-mRNA-processing factor 39 [Homo sapiens]

669 aa protein

accession:NP_060392.3

Alignment Sequence Identical proteins

pre-mRNA-processing factor 39 isoform X1 ...

pre-mRNA-processing factor 39 isoform X1 [Mus musculus]

466 aa protein

accession:XP_006516092.1

Alignment Sequence Identical proteins

Query: pre-mRNA processing factor 39, isoform B ...

pre-mRNA processing factor 39, isoform B [Drosophila melanogaster]

1066 aa protein

accession:NP_733256.2

Sequence Identical proteins

pre-mRNA processing factor 39, isoform E ...

pre-mRNA processing factor 39, isoform E [Drosophila melanogaster]

1009 aa protein

accession:NP_001097957.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001097957.1\|	pre-mRNA processing factor 39, isoform E [Drosophila melanogaster]	2095	2095	94%	0.0	100.00%	NP_001097957.1
2 Select seq ref\|XP_002664507.1\|	pre-mRNA-processing factor 39 [Danio rerio]	354	354	56%	3e-107	34.69%	XP_002664507.1
3 Select seq ref\|NP_504495.1\|	Suppressor of forked domain-containing protein [Caenorhabditis elegans]	264	264	53%	2e-74	29.40%	NP_504495.1
4 Select seq ref\|NP_060392.3\|	pre-mRNA-processing factor 39 [Homo sapiens]	261	466	51%	2e-73	39.78%	NP_060392.3
5 Select seq ref\|XP_006516092.1\|	pre-mRNA-processing factor 39 isoform X1 [Mus musculus]	252	252	33%	1e-72	38.71%	XP_006516092.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments