Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_839977.2 nonsense-mediated mRNA decay factor SMG5 [Mus musculus] ... Query length: 1017 aa

protein SMG7-like ...

protein SMG7-like [Glycine max]

957 aa protein

accession:XP_040865305.1

Alignment Sequence Identical proteins

Smg5 nonsense mediated mRNA decay factor, isoform C ...

Smg5 nonsense mediated mRNA decay factor, isoform C [Drosophila melanogaster]

1177 aa protein

accession:NP_001285914.1

Alignment Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG5 ...

nonsense-mediated mRNA decay factor SMG5 [Danio rerio]

1099 aa protein

accession:NP_001020094.1

Alignment Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG5 isoform 1 ...

nonsense-mediated mRNA decay factor SMG5 isoform 1 [Homo sapiens]

1016 aa protein

accession:NP_056142.2

Alignment Sequence Identical proteins

Query: nonsense-mediated mRNA decay factor SMG5 ...

nonsense-mediated mRNA decay factor SMG5 [Mus musculus]

1017 aa protein

accession:NP_839977.2

Sequence Identical proteins

nonsense-mediated mRNA decay factor SMG5 isoform X1 ...

nonsense-mediated mRNA decay factor SMG5 isoform X1 [Mus musculus]

1003 aa protein

accession:XP_006501406.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_006501406.1\|	nonsense-mediated mRNA decay factor SMG5 isoform X1 [Mus musculus]	2058	2058	100%	0.0	98.62%	XP_006501406.1
2 Select seq ref\|NP_056142.2\|	nonsense-mediated mRNA decay factor SMG5 isoform 1 [Homo sapiens]	1811	1811	100%	0.0	92.44%	NP_056142.2
3 Select seq ref\|NP_001020094.1\|	nonsense-mediated mRNA decay factor SMG5 [Danio rerio]	689	689	41%	0.0	77.67%	NP_001020094.1
4 Select seq ref\|NP_001285914.1\|	Smg5 nonsense mediated mRNA decay factor, isoform C [Drosophila melanogaster]	102	244	74%	1e-20	24.90%	NP_001285914.1
5 Select seq ref\|XP_040865305.1\|	protein SMG7-like [Glycine max]	83.6	83.6	15%	7e-15	32.53%	XP_040865305.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments