Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_898874.2
RT1 class II, locus DOa precursor [Rattus norvegicus]
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Query length:
250 aa
DOMAINS: and other(s) domains
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H-2 class II histocompatibility antigen, A-Q alpha chain
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H-2 class II histocompatibility antigen, A-Q alpha chain [Danio rerio]
257 aa protein
accession:XP_009302401.1
HLA class II histocompatibility antigen, DO alpha chain precursor
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HLA class II histocompatibility antigen, DO alpha chain precursor [Homo sapiens]
250 aa protein
accession:NP_002110.1
histocompatibility 2, O region alpha locus precursor
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histocompatibility 2, O region alpha locus precursor [Mus musculus]
250 aa protein
accession:NP_032232.2
histocompatibility 2, O region alpha locus isoform X1
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histocompatibility 2, O region alpha locus isoform X1 [Mus musculus]
220 aa protein
accession:XP_036016223.1
Query: RT1 class II, locus DOa precursor
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RT1 class II, locus DOa precursor [Rattus norvegicus]
250 aa protein
accession:NP_898874.2
RT1 class II, locus DOa isoform X2
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RT1 class II, locus DOa isoform X2 [Rattus norvegicus]
220 aa protein
accession:XP_017457035.1
DOMAINS: and other(s) domains
...
H-2 class II histocompatibility antigen, A-Q alpha chain [Danio rerio]
257 aa protein
accession:XP_009302401.1
HLA class II histocompatibility antigen, DO alpha chain precursor [Homo sapiens]
250 aa protein
accession:NP_002110.1
histocompatibility 2, O region alpha locus precursor [Mus musculus]
250 aa protein
accession:NP_032232.2
histocompatibility 2, O region alpha locus isoform X1 [Mus musculus]
220 aa protein
accession:XP_036016223.1
RT1 class II, locus DOa precursor [Rattus norvegicus]
250 aa protein
accession:NP_898874.2
RT1 class II, locus DOa isoform X2 [Rattus norvegicus]
220 aa protein
accession:XP_017457035.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 458 | 458 | 88% | 3e-165 | 100.00% | XP_017457035.1 | |
| 2 | 432 | 432 | 100% | 3e-154 | 88.80% | NP_032232.2 | |
| 3 | 378 | 378 | 100% | 6e-133 | 71.20% | NP_002110.1 | |
| 4 | 100 | 100 | 79% | 7e-24 | 28.36% | XP_009302401.1 | |
| 5 | 385 | 385 | 88% | 3e-136 | 89.55% | XP_036016223.1 |