Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
P61562.1
RecName: Full=Syncytin-1; AltName: Full=ERV-W1 provirus ancestral Env polyprotein; AltName: Full=ERVWE1 envelope protein; AltName: Full=Endogenous retrovirus group W member 1; AltName: Full=Envelope polyprotein; AltName: Full=Syncytin; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor [Hylobates pileatus]
...
Query length:
538 aa
DOMAINS: and other(s) domains
...
uncharacterized protein
...
uncharacterized protein [Danio rerio]
468 aa protein
accession:XP_021329719.1
syncytin-B precursor
...
syncytin-B precursor [Mus musculus]
618 aa protein
accession:NP_001375420.1
syncytin-A precursor
...
syncytin-A precursor [Mus musculus]
617 aa protein
accession:NP_001013773.1
syncytin-2 preproprotein
...
syncytin-2 preproprotein [Homo sapiens]
538 aa protein
accession:NP_997465.1
Query: RecName: Full=Syncytin-1; AltName: Full=ERV-W1 provirus ancestral Env polyprotein; AltName: Full=ERVWE1 envelope protein; AltName: Full=Endogenous retrovirus group W member 1; AltName: Full=Envelope polyprotein; AltName: Full=Syncytin; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor
...
RecName: Full=Syncytin-1; AltName: Full=ERV-W1 provirus ancestral Env polyprotein; AltName: Full=ERVWE1 envelope protein; AltName: Full=Endogenous retrovirus group W member 1; AltName: Full=Envelope polyprotein; AltName: Full=Syncytin; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor [Hylobates pileatus]
538 aa protein
accession:P61562.1
syncytin-1 precursor
...
syncytin-1 precursor [Homo sapiens]
538 aa protein
accession:NP_001124397.1
DOMAINS: and other(s) domains
...
uncharacterized protein [Danio rerio]
468 aa protein
accession:XP_021329719.1
syncytin-B precursor [Mus musculus]
618 aa protein
accession:NP_001375420.1
syncytin-A precursor [Mus musculus]
617 aa protein
accession:NP_001013773.1
syncytin-2 preproprotein [Homo sapiens]
538 aa protein
accession:NP_997465.1
RecName: Full=Syncytin-1; AltName: Full=ERV-W1 provirus ancestral Env polyprotein; AltName: Full=ERVWE1 envelope protein; AltName: Full=Endogenous retrovirus group W member 1; AltName: Full=Envelope polyprotein; AltName: Full=Syncytin; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor [Hylobates pileatus]
538 aa protein
accession:P61562.1
syncytin-1 precursor [Homo sapiens]
538 aa protein
accession:NP_001124397.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 1037 | 1037 | 100% | 0.0 | 94.61% | NP_001124397.1 | |
2 | 186 | 186 | 46% | 3e-50 | 43.30% | NP_001375420.1 | |
3 | 68.2 | 68.2 | 25% | 9e-11 | 26.49% | XP_021329719.1 | |
4 | 176 | 176 | 41% | 7e-47 | 41.25% | NP_001013773.1 | |
5 | 163 | 163 | 44% | 1e-42 | 39.30% | NP_997465.1 |