Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: PKK95579.1 hypothetical protein CVV60_00540 [Tenericutes bacterium HGW-Tenericutes-5] ... Query length: 392 aa

helix-turn-helix domain-containing protein ...

helix-turn-helix domain-containing protein [Bacillus]

772 aa protein

accession:WP_009968004.1

Alignment Sequence Identical proteins

MDR efflux pump AcrAB transcriptional activator RobA ...

MDR efflux pump AcrAB transcriptional activator RobA [Enterobacteriaceae]

289 aa protein

accession:WP_000371666.1

Alignment Sequence Identical proteins

helix-turn-helix domain-containing protein ...

helix-turn-helix domain-containing protein [Synechocystis salina]

290 aa protein

accession:WP_194020559.1

Alignment Sequence Identical proteins

Query: hypothetical protein CVV60_00540 ...

hypothetical protein CVV60_00540 [Tenericutes bacterium HGW-Tenericutes-5]

392 aa protein

accession:PKK95579.1

Sequence Identical proteins

AraC family transcriptional regulator ...

AraC family transcriptional regulator [Clostridioides difficile]

289 aa protein

accession:WP_011861549.1

Alignment Sequence Identical proteins

transcriptional regulator MelR ...

transcriptional regulator MelR [Escherichia coli]

302 aa protein

accession:WP_001090750.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|WP_194020559.1\|	helix-turn-helix domain-containing protein [Synechocystis salina]	91.7	91.7	28%	1e-19	36.36%	WP_194020559.1
2 Select seq ref\|WP_009968004.1\|	helix-turn-helix domain-containing protein [Bacillus]	76.6	76.6	24%	1e-13	40.62%	WP_009968004.1
3 Select seq ref\|WP_000371666.1\|	MDR efflux pump AcrAB transcriptional activator RobA [Enterobacteriaceae]	68.6	68.6	26%	1e-11	32.35%	WP_000371666.1
4 Select seq ref\|WP_011861549.1\|	AraC family transcriptional regulator [Clostridioides difficile]	68.6	68.6	26%	1e-11	34.62%	WP_011861549.1
5 Select seq ref\|WP_001090750.1\|	transcriptional regulator MelR [Escherichia coli]	68.9	68.9	25%	1e-11	32.32%	WP_001090750.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments