Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: Q0R5Q9.1 RecName: Full=Envelope glycoprotein gp63; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; Short=SU; AltName: Full=Glycoprotein 46; Short=gp46; Contains: RecName: Full=Transmembrane protein; Short=TM; AltName: Full=Glycoprotein 21; Short=gp21; Flags: Precursor [HTLV-3 strain 2026ND] ... Query length: 491 aa

syncytin-B precursor ...

syncytin-B precursor [Mus musculus]

618 aa protein

accession:NP_001375420.1

Alignment Sequence Identical proteins

MLV-related proviral Env polyprotein-like [Rattus norvegicus]

793 aa protein

accession:XP_063120531.1

Alignment Sequence Identical proteins

MLV-related proviral Env polyprotein-like [Mus musculus]

632 aa protein

accession:XP_036013019.1

Alignment Sequence Identical proteins

MLV-related proviral Env polyprotein [Mus musculus]

632 aa protein

accession:XP_017176693.3

Alignment Sequence Identical proteins

Query: RecName: Full=Envelope glycoprotein gp63; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; Short=SU; AltName: Full=Glycoprotein 46; Short=gp46; Contains: RecName: Full=Transmembrane protein; Short=TM; AltName: Full=Glycoprotein 21; Short=gp21; Flags: Precursor ...

RecName: Full=Envelope glycoprotein gp63; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; Short=SU; AltName: Full=Glycoprotein 46; Short=gp46; Contains: RecName: Full=Transmembrane protein; Short=TM; AltName: Full=Glycoprotein 21; Short=gp21; Flags: Precursor [HTLV-3 strain 2026ND]

491 aa protein

accession:Q0R5Q9.1

Sequence Identical proteins

syncytin-B-like ...

syncytin-B-like [Homo sapiens]

327 aa protein

accession:XP_047280263.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_063120531.1\|	MLV-related proviral Env polyprotein-like [Rattus norvegicus]	68.2	68.2	29%	5e-11	27.92%	XP_063120531.1
2 Select seq ref\|NP_001375420.1\|	syncytin-B precursor [Mus musculus]	66.6	66.6	29%	1e-10	33.33%	NP_001375420.1
3 Select seq ref\|XP_047280263.1\|	syncytin-B-like [Homo sapiens]	48.1	48.1	41%	5e-05	24.48%	XP_047280263.1
4 Select seq ref\|XP_036013019.1\|	MLV-related proviral Env polyprotein-like [Mus musculus]	66.2	66.2	28%	1e-10	31.54%	XP_036013019.1
5 Select seq ref\|XP_017176693.3\|	MLV-related proviral Env polyprotein [Mus musculus]	66.2	66.2	28%	2e-10	31.54%	XP_017176693.3

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments