Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
Q27ID9.1
RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62]
...
Query length:
536 aa
DOMAINS: and other(s) domains
...
U11/U12 small nuclear ribonucleoprotein 31 kDa protein
...
U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Glycine max]
273 aa protein
accession:XP_003527533.1
uncharacterized protein si:dkey-210i3.1
...
uncharacterized protein si:dkey-210i3.1 [Danio rerio]
505 aa protein
accession:XP_001335379.1
uncharacterized protein LOC107986768
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uncharacterized protein LOC107986768 [Homo sapiens]
333 aa protein
accession:XP_047277128.1
Query: RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag
...
RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62]
536 aa protein
accession:Q27ID9.1
uncharacterized protein LOC118567843
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uncharacterized protein LOC118567843 [Mus musculus]
344 aa protein
accession:XP_036012047.1
uncharacterized protein Gm53928 isoform X2
...
uncharacterized protein Gm53928 isoform X2 [Mus musculus]
363 aa protein
accession:XP_036016098.1
DOMAINS: and other(s) domains
...
U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Glycine max]
273 aa protein
accession:XP_003527533.1
uncharacterized protein si:dkey-210i3.1 [Danio rerio]
505 aa protein
accession:XP_001335379.1
uncharacterized protein LOC107986768 [Homo sapiens]
333 aa protein
accession:XP_047277128.1
RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62]
536 aa protein
accession:Q27ID9.1
uncharacterized protein LOC118567843 [Mus musculus]
344 aa protein
accession:XP_036012047.1
uncharacterized protein Gm53928 isoform X2 [Mus musculus]
363 aa protein
accession:XP_036016098.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 498 | 498 | 47% | 3e-174 | 95.65% | XP_036012047.1 | |
| 2 | 61.6 | 61.6 | 63% | 6e-09 | 25.98% | XP_047277128.1 | |
| 3 | 40.8 | 40.8 | 31% | 0.033 | 24.86% | XP_001335379.1 | |
| 4 | 39.3 | 39.3 | 6% | 0.065 | 45.95% | XP_003527533.1 | |
| 5 | 497 | 497 | 47% | 1e-173 | 95.65% | XP_036016098.1 |