Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: QIV13375.1 RNA polymerase II largest subunit [Kockovaella sp.] ... Query length: 247 aa

Query: RNA polymerase II largest subunit ...

RNA polymerase II largest subunit [Kockovaella sp.]

247 aa protein

accession:QIV13375.1

Sequence Identical proteins

DNA-directed RNA polymerase II complex large subunit Rpb1 ...

DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]

1752 aa protein

accession:NP_595673.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB1 ...

DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]

1970 aa protein

accession:NP_001277997.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB1 ...

DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]

1970 aa protein

accession:NP_000928.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB1 ...

DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]

1965 aa protein

accession:XP_005156282.1

Alignment Sequence Identical proteins

RNA polymerase II subunit A ...

RNA polymerase II subunit A [Drosophila melanogaster]

1887 aa protein

accession:NP_511124.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_595673.1\|	DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]	247	247	100%	8e-74	53.85%	NP_595673.1
2 Select seq ref\|NP_001277997.1\|	DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]	211	211	100%	3e-61	43.43%	NP_001277997.1
3 Select seq ref\|NP_000928.1\|	DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]	211	211	100%	3e-61	43.43%	NP_000928.1
4 Select seq ref\|XP_005156282.1\|	DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]	209	209	100%	3e-60	43.60%	XP_005156282.1
5 Select seq ref\|NP_511124.1\|	RNA polymerase II subunit A [Drosophila melanogaster]	206	206	100%	3e-59	43.37%	NP_511124.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments