Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: QOL71374.1 RPB2 [Clitopilus prunulus] ... Query length: 180 aa

Query: RPB2 ...

RPB2 [Clitopilus prunulus]

180 aa protein

accession:QOL71374.1

Sequence Identical proteins

DNA-directed RNA polymerase II complex subunit Rpb2 ...

DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]

1210 aa protein

accession:NP_593101.2

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II core subunit RPB2 ...

DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]

1224 aa protein

accession:NP_014794.3

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]

1194 aa protein

accession:NP_498047.2

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 isoform 1 ...

DNA-directed RNA polymerase II subunit RPB2 isoform 1 [Homo sapiens]

1174 aa protein

accession:NP_000929.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]

1174 aa protein

accession:NP_722493.2

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_593101.2\|	DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]	230	230	96%	6e-69	63.24%	NP_593101.2
2 Select seq ref\|NP_498047.2\|	DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]	203	203	91%	1e-59	59.28%	NP_498047.2
3 Select seq ref\|NP_014794.3\|	DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]	200	200	91%	2e-58	56.42%	NP_014794.3
4 Select seq ref\|NP_000929.1\|	DNA-directed RNA polymerase II subunit RPB2 isoform 1 [Homo sapiens]	193	193	90%	3e-56	56.36%	NP_000929.1
5 Select seq ref\|NP_722493.2\|	DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]	193	193	90%	4e-56	56.36%	NP_722493.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments